Query= MSMg01no311_j08.b1 MSMg01no311_j08.b1 CHROMAT_FILE:
MSMg01no311_j08.b1 PHD_FILE: MSMg01no311_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:28 2005
(319 letters)
>mm_chr13_116505497_116506212
Length = 716
Score = 547 bits (283), Expect = e-160
Identities = 306/315 (97%), Gaps = 3/315 (0%)
Strand = Plus / Minus
Query: 5 gaattcttttattcagtaatcaaatgacataaaatgctcctgatacagaagacaactgct 64
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 516 gaattcttttattcagtaatcaaatgacataaaatgctccagatacagaagacaactgct 457
Query: 65 attgcaggcatggaaacagagaaataaagtgttccaagaaatatctgttttgtttttttt 124
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 456 attgcaggcatggaaacagagaaataaagtgttccaagaaatatctgtt---tttttttt 400
Query: 125 ctttaaaagtaagttttgaaggtctgtacaatttttaagctgaaaatcaatttcggcaga 184
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 399 ctttaaaaataagttttgaaggtctgtacaatttttaagcggaaaatcaatttcggcaga 340
Query: 185 gccctgcatctattatgtgaacaactccatgttttgatccttttaaaaaataagagaagg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gccctgcatctattatgtgaacaactccatgttttgatccttttaaaaaataagagaagg 280
Query: 245 caattttggaaatcagttttgtggctgcttctgccattgttaaaattgttcatcaaatgt 304
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 279 caattttggaaatcagttttgtggctgcttctgccagggctaaaattgttcatcaaatgt 220
Query: 305 gaaataaaactatat 319
|||||||||||||||
Sbjct: 219 gaaataaaactatat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 716
Length adjustment: 9
Effective length of query: 310
Effective length of database: 707
Effective search space: 219170
Effective search space used: 219170
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no311_j08.g1 MSMg01no311_j08.g1 CHROMAT_FILE:
MSMg01no311_j08.g1 PHD_FILE: MSMg01no311_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:28 2005
(219 letters)
>mm_chr13_116335912_116336531
Length = 620
Score = 410 bits (212), Expect = e-119
Identities = 218/220 (99%), Gaps = 1/220 (0%)
Strand = Plus / Plus
Query: 1 cacgggtgggattgagggagtccttgtttcttgtgctttctcttgggcttttcttcttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacgggtgggattgagggagtccttgtttcttgtgctttctcttgggcttttcttcttct 260
Query: 61 gttttttt-gttgttgttgctgcttgtctgttttggtttctgtccaatatgatgtcttag 119
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 gttttttttgttgttgttgctgcttgtctgttttggtttctgtccaatatgatgtgttag 320
Query: 120 tttttgtttttaatttgaaatcacacacacacacatatatatcatcatgttatgatctct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttgtttttaatttgaaatcacacacacacacatatatatcatcatgttatgatctct 380
Query: 180 tggacgcctgtttctttttcctaattagagaaagggaatg 219
||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggacgcctgtttctttttcctaattagagaaagggaatg 420
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 620
Length adjustment: 9
Effective length of query: 210
Effective length of database: 611
Effective search space: 128310
Effective search space used: 128310
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
