BAC Information

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BAC

Clone NameMSMg01-312D01
Chromosome13 (Build37)
Map Location 84,708,078 - 84,708,271
singlet/doubletsinglet
Overlap genenone
Upstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081, LOC667101, Tmem161b, LOC666795, LOC667111
Downstream geneLOC382786, LOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1, LOC435373
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312D01.T7 (MSMg01no312_d01.b1)MSMg01-312D01.TJ (MSMg01no312_d01.g1)
ACCAG434477AG434478
length838810
length of high quality
(start - end)
197 (130 - 326)---
definitionCHROMAT_FILE: MSMg01no312_d01.b1 PHD_FILE: MSMg01no312_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:12 2005CHROMAT_FILE: MSMg01no312_d01.g1 PHD_FILE: MSMg01no312_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGGGATTTGGAAGATTATGTGCTGATTCTGAGCTTTGGTTAAAATGT
GATCCAACCCTTAGAGTCTTCCCCCGTCTGACAATGTAGCAAAATACTTC
TTACAATTTACCTGCCTTGGAAACCATCCCTCAGCTCTAAGTTTTCAGTG
CCTGTTCCCTGCACATTCCTGAATTTCAGGACTTGCATTCTCACTTTCCT
TAATAGACTTTTGCACTTGGTCATTTGAAAGATAGAAAACTTTGTTAAGT
CTACAACCCAAATAATATAATCCTTATTATGTAAGACAAATCGCACGTAA
TTGAAACTAATTTTTTTTTGTTTACCGCCCCCCCCCCCCACCAGTTCAAG
AAAAATATAATCTTGCGTAAGAAACCCCCCCCTAAAAAAAAAAAAAATTA
TCCCCGTTTTGGGTGTGGGGTTCTTTTCTTTTTTTTCTCTTTTTTTCTCC
CTTTCCTTTCTTCCCCTTTCTTTTTTTCTATGTCCATTTTTTTTTTTCCC
TTTGTTTACTAGCCATTTATACCTCGTTGTCTTTAAATTCATCTAACTTG
TGTCTCTTTGTAATACTTTGCTTAATTTCTGATTATATTTACTTCAAAAC
TTTGTTTTGATGTTATTATTTCACTTCTTTGGTTCCTTTTTTCACCCTTG
ATTTTAATTTGTTTATTCTCTCCTACCCACTCCTAATTCACACTTTTCTT
TTATCCTTTCTTTCCCCTTTTTTACTCCTCTATTTTCTCTCTATCCATTT
CTCTTACCCTCTTTTATTTATAACTCCTATTACAATTG
AATATGAGGGGACGGNCTGGGGGNNGTTTACGGAGCCGAAGGNNNNAGGG
GGGGTTACCGGCAGGGGGGGNNNNAGGGGGGGNNNNNNNNNNAANNNGAA
GNAGGAAGATGNTACGAAAAAAAGAGGAGGGNNNNNNNAANNNNANNANA
ANAAGGAAGGANGAGGAAAGGGAGAAGGAGGGGGAGAGGGGAAGGAGANG
AAGAAAAAAGGAAAAAGGAGAGGGGGAANNGAAGAGGNNGAAATTTTTTG
TTTAAAAGAGGAAATGTTAGAATTGTATAGGTTAGAGAAAGGAAGAAGGN
AGAAAGGATTTTTAGTAGGTTAGAAAGAAAAAAAAGAGAAGAGAAAAAAA
GTTTTTTTTTTTCTCCCCCCCCCCCCCCCCCCAANTAATGTTTTGTAGTG
TTGTTTTTGGTGTTGTGTGTTAAAAAAAAAAAAAAAAAAAAGGGGGGGGG
GGGGGGGGAGTTGGATAGTTCGTTTTGCGGATTGTCCTTCTTGTTGCTAT
GATTTTTTGGCGTTTTATTACAGTGTGGATTTTGTTTTTTTTTAAGTTAG
TTTCGTATGCTTATGCTTAGCTTTGGTTTTTCTTTCCCTTTTTTGCCTCC
TGCCGCCCTATATTCGCTTGATATTTTTTTCTTCCATTTTTTCTATCATC
GTTTTTTTTTATTGGTTAAGTTATGCCTTTTAGCCGTATATCCCAAGCTT
ATTATCGCCCGTTACTTGGATTTTTTTTTTCTTTTCACTGAAACGAGTCC
ATATATTTACCGATGTTTATTGTATACGCGCTTATTGCGCGCTCACCGAC
CGACATGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_d01.b1 MSMg01no312_d01.b1 CHROMAT_FILE:
MSMg01no312_d01.b1 PHD_FILE: MSMg01no312_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:12 2005
         (197 letters)



>mm_chr13_84707878_84708474
          Length = 597

 Score =  375 bits (194), Expect = e-109
 Identities = 194/194 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacaatgtagcaaaatacttcttacaatttacctgccttggaaaccatccctcagctcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gacaatgtagcaaaatacttcttacaatttacctgccttggaaaccatccctcagctcta 335

                                                                       
Query: 61  agttttcagtgcctgttccctgcacattcctgaatttcaggacttgcattctcactttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 agttttcagtgcctgttccctgcacattcctgaatttcaggacttgcattctcactttcc 275

                                                                       
Query: 121 ttaatagacttttgcacttggtcatttgaaagatagaaaactttgttaagtctacaaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttaatagacttttgcacttggtcatttgaaagatagaaaactttgttaagtctacaaccc 215

                         
Query: 181 aaataatataatcc 194
           ||||||||||||||
Sbjct: 214 aaataatataatcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)