BAC Information

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BAC

Clone NameMSMg01-313C01
Chromosome13 (Build37)
Map Location 96,409,121 - 96,409,528
singlet/doubletsinglet
Overlap geneIqgap2
Upstream geneTbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r
Downstream geneF2rl2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313C01.T7 (MSMg01no313_c01.b1)MSMg01-313C01.TJ (MSMg01no313_c01.g1)
ACCAG435145AG435146
length1,2631,306
length of high quality
(start - end)
419 (34 - 452)329 (74 - 402)
definitionCHROMAT_FILE: MSMg01no313_c01.b1 PHD_FILE: MSMg01no313_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:28 2005CHROMAT_FILE: MSMg01no313_c01.g1 PHD_FILE: MSMg01no313_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGCGACATTGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTC
CACAGGCCTGACGTCATCTAGAATTCCAAGAACAAAAAACAAAGTTATTT
GTGCAATTTGTCCTTCAGCAACTCCCGAGCAAATAGTTTTCAGTCGCGAT
GGAAGCTGATATAAATGATGTCACGTAATTGTTAATTAGCAGAACGTAGC
TGCTAGAACGTTGTTTCAAATAAGAATCACTCAGGGTCGACAGTTTTTTA
AAATCATTCAAAGGTTTTGTTTTCAACTCCGTGTTTCTGCCTGAAAGCCA
GGCATGGGGGAGCGTGCCTGTAATCCAAACATTTAGGATCTCAAATTTGA
GGCCAGCCTGGGCTAGATGCTAAATCTCGGTCTAATTCATTCCTGATGAT
GATTATAGGAAGCTGGGGTATGTGTGTGGGAAGGGATATGCAGCTTCCTG
AGGTTTTTTTTTTTCCCCCCCCCCGCCAGACATCTCCCCCCCCCCAAAAA
AAAGAGGGGGTNCCCNTGTTTGACTCTCTGGAGTCTTTAGTTGTGCATTC
TCAGACAGCCTGAAAATCCCTGGCAGGTAGGTGTCACGGGGCTAGAGGAA
ATGGCTCTGCAGAGACCCTGGATAAGGTAGAACAGTACGCTGTTGCTGTC
ACGCTCGCTCCTTCTTCTTGTGTATACTTGTCTTACCTATGAAATGGCTA
ATGCCACCTTTGCCAATGCCCTACTGGATTTTCTCCCATTTTTAAAACCT
CACTCTTGTCTTCAAACCCTACTCAATCTCCCGAATCATCCCCCTCCTTT
TCTTCCTCCCACTACTCCTTTACTCTCCCCTTCCCCGATCCCACCTTCCT
ATCAACTCTTTTCTTTCTTCTCTTACTCACCTTCACCTCTTTTTCTTCCT
TTCTTACCCACCTTCTCCTTTTTCTATCTATCTTCTTCTCTCCCTCCTCT
CTTCTCTCTATCCCCTCCCCTTCTTCTTTTCCTTTCCCTCTCCCCCTTTC
TTCCTCTCTCTCACTCTCTCTTCTCCTATCCTTCTTACTCCTTTCTCTCC
TTCCTATTCCCTTCATATCTCTTTTACAACCAACTTTTTCTTTTTTTTTC
CTCTCTCCTTTCTCCCTTCCCTCTCTACTTCTCTACTTCTACTCTTTTAT
CCTCTCTCCCTATCCCTCTCTCCCCCTTTTCCTTCTCTCCCCCTTATCTT
CCTGCATTTTATCTCATCTCTCCTCATCTACCACTCCTCTTCTATCTTCC
TCCTTCCATTCTC
NNNTTACTGCTAGAGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTTTGAGTACCATGCTTGAAAGTGA
ACCAAACAAGGGAAAGAAGGGGCTGGAGAGATGAGTGCTGGCTGCTCAGT
CCTCAGGAAGGGAGCTGGGCTTCCAGTACCTAACCAAGTGAGTATCCCCA
CACATCTGTGACTCCAGATCTCAGGTGTCTAACACCCTCCTCTGACTCCC
GTGCTTAAAGGTAGACACACACACCACAAACATACACACACACACACACA
CACACACACACATATACATACATATACACAAACACACACCACAAGCATAT
ACACACAGATACACACACACCACAAACACATACACACATACATACAAACC
CACTTATTCACCTCACAAAATCTTGTCAGCATGAGAAAAAGCTAACAAAG
TATTGATTTTTTTTCCCCCCCCCCCAGAANTGGNTTTAAGGAAATAAAAA
AAGGGGGGGGATTANTANTANAAAGGNTGGTCANTGTTGGNCACTGCTGG
TCACTGCTGACCACTGTTTGTCACTGCTGGTCACTGCTGGCCATTGCTGG
TCACTACTCTGTTGTCACTGGCACGATCAGATAAAGAATAACTTTTAAAA
TATTAACAGAAGGGCTGGAGAGATAGCGCGACAGTCAAGAGCACTGGCTG
CTCTTGCAGAGGACCAAGCTTGGGTCCTAGCACTGACACGGTGCCTCATG
CTGTCTATAACTCGAGTTCCAGGCTCATTCTTTCTGTCTCCCAGGGCAGC
AGGCACACATGGACTCATACAGGCTAAAACTTTCCTACCCTTAAAATAAA
AACTAATTAAATCTCTAAACATTGATATACCCACCTTTTTTAAAAATAAA
ATTTTCCCCAAGCATGGAAAACGTGGCTTAAAAGTGTCCAAAAAAATTAC
CTTGGTCTCTTAATCAATTGCCTAACAATATAAACTCCAAAGTCTTATAA
CTGGGCCCTAGGTCACCAATTGGCTGCAAGGTAAGGAACAAATCTTGTAT
TGGGACCCCGACCAGTCTCACTGGGTTGTGTTAAACACAATTCACCACTG
CGTATACCGGGTCTGTTGCTTACTCCCTTTTGCATTATTCTTAACTTTAT
TCTTTTTTCCCTTGTTTCCCTCTACCTCTCCTTCCCTTAATAATTCCCCC
TCCCCTATTGTAGCAAAAGAGTATATACAATTTCTATACGTATATTATTC
TCTTCACATAAATACCCACCTCTCTACACTCCCTTCTAGTTTCTCTACTC
CTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_c01.b1 MSMg01no313_c01.b1 CHROMAT_FILE:
MSMg01no313_c01.b1 PHD_FILE: MSMg01no313_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:28 2005
         (419 letters)



>mm_chr13_96409067_96409885
          Length = 819

 Score =  758 bits (392), Expect = 0.0
 Identities = 404/408 (99%)
 Strand = Plus / Minus

                                                                       
Query: 12  gaattccacaggcctgacgtcatctagaattccaagaacaaaaaacaaagttatttgtgc 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gaattccacaggcctgacgtcatctagaattccaagaacaaaaaacaaagttatttgtgc 403

                                                                       
Query: 72  aatttgtccttcagcaactcccgagcaaatagttttcagtcgcgatggaagctgatataa 131
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aatttgtccttcagcaactcgtgagcaaatagttttcagtcgcgatggaagctgatataa 343

                                                                       
Query: 132 atgatgtcacgtaattgttaattagcagaacgtagctgctagaacgttgtttcaaataag 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 atgatgtcacgtaattgttaattagcagaacgtagctgctagaacgttgtttcaaataag 283

                                                                       
Query: 192 aatcactcagggtcgacagttttttaaaatcattcaaaggttttgttttcaactccgtgt 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aatcactcagggtcgacagttttttaaaatcattcaaaggttttgttttcaactccgtgt 223

                                                                       
Query: 252 ttctgcctgaaagccaggcatgggggagcgtgcctgtaatccaaacatttaggatctcaa 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ttctgcctgaaagccaggcatgggggagcgtgcctgtaatccaaacatttaggatctcaa 163

                                                                       
Query: 312 atttgaggccagcctgggctagatgctaaatctcggtctaattcattcctgatgatgatt 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 atttgaggccagcctgggctagatgctaaatctcggtctaattcattcctgatgatgatt 103

                                                           
Query: 372 ataggaagctggggtatgtgtgtgggaagggatatgcagcttcctgag 419
           | |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 102 agaggaagctggggtatgtgtgtgggaagggacatgcagcttcctgag 55


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)