CCGGCTTTTTNNNNNAGCACTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCAGTTAACTTATTACTACCTTAGAGCTGTATCTCACTTA
TTTATGACTACCTTCGGTCGTTATCAGTCTGCGACCACAGAGAGAATAAA
GCATGCCGGCTTTAGCCAGAGCCTATGGTTTCTTCCACTCTTAGGAACTT
TCCTAAGCATCGTTGTGAGCAAGGGAGGGATGGCATGCTTCCGAAAATCA
TGGACACAGCTGCCCTGGAGCAAGGATGAGCTGTGTCACCTTGGGATGTG
TGAATATTTCAAGAGTTTCCCTGGAAGCCAGGAGAATGTGCGTCTCTGCA
TTTCTCAGTTTAAATACGATGATCAGGTCACCACAGTTTCCAAACGCAAG
CTTAACATCATCTAACCACACGCCTGGCTTTGTACTTCAGCAACTAAATA
TCAGTAGTCAGAGATGGACGCAGAACTCGTGGTCTATTTTGGAAACCCAT
CGCTCTGGAAGCTGCCGCCGGCAGCTCTCTCAAACTATGGAACAGGACTC
TCTGCACGGCTGAATCCAGCATCTAATCCCAAGGGGTTGCAAAATTAGAA
GTTGCTCAGCTATTCTTTTCCTCTTCACGTCAGAGCTTCTGATTCCACTG
CAGTTGAAGGGGGTGGGGGTGGGGTGCNTTNNTANNNGTTGTTTGATATX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCCTGTCTTTTAAATCGTCTCTATATTACTTGCTT
TGGGTTCTTTAGGTTCTTTATTTTCAATAGTTACTTTCATTATCCTAATT
CTCATAATCTAGGTCCATTTTATCTTGGTCTTTTTTACGATTTCTTCCTT
TATTTTTTCTTTTGTTAAAAAATCCTATATTTTTTCACATCTATTCATCT
TTACGTCATATATACCTTGTTATTATACTCTTCTTTTTGTCTTAACTTTC
TCTCCTCTTTATTTTCTACTATTTCCATTTCTCTTATCTCCTATTTTTCA
TTGCTTTTTTTCTTCTATTTATTCTCTC

NNNNGGGAAGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTGGGGTGCTTGCATGATAGATTAAG
GATCTGGATGAGTCAGAATCTTCCCCAAAAGCAGGAGAGACCATTTTTCA
CAGGCACTGTCCCGAAATTCTGACACCCCTTATCTTCTGAGAAATGGGTG
GGTTCTCAACATTTGCTTCAATTTATACTCTGCCAAAGAATTACACAAAA
CATCAGGGTATGGGTCCTGCCCTCCAGAATTACTGATTTAACACTTTGAG
GTAGATCTGAACCTTGGAAATGTTTTAAAGCTCTCTGAATGATTCACAAA
TGCTGTACATATTTTAAGACTGCTGAATAAGAGGGGGGTATGTATAGGAG
TGCATTGACAGCATGCACGTGAAAAGAGGACTTCAGACATGGAAGCCCAT
TTTTTTTTTTACCCCCCCCAATTCAAATGAGCATTTGCAAAAAAAAAAAG
GGCGGGGAAGTGGAGTTTTGTCCCTGTGTGACAACGACAGAGTTCACAGT
GGTAGAAAATGGAAAAACATCAAAAGGTACTCCACATCTATAATCACAAG
CAAATGGGAACGAAGGATACCCACATCTGTTAGTCTTCTGTTGCTATAGT
AAAATACTCTGACCAAAAGCAATTCAGAGAAGAAAGGATTTATCTTGGCT
TAGGGTTCAAGTGGGATAGACTCCATCCTGGTAGGGAGGGAAGCTATGGC
TTCAGGGGCTTGCCGCCAGTCTGCTAGTCAGGAAACAGAAGGATCACATT
TTCTCTGCACACTGGAAGCAGACACTAATAACAGGAAGAGTGAGCCCAGG
TCATAAACCCCCAAGCCTGCCCCAGTGACATACTTCCTCCACAAGGTCCT
TAAAATTTCCAAACCCTCCCTACCGGCTTTGCTAACTGGGGAATCCACAG
TTTTACACTGTTAACCAATGGGGACTTTTCTCTTTTCCCCCCTACCTGTT
AATCCACCTCTTGTTTCCCCTCCCGGCTGCCAAAAAAAACATTCTACTTC
TTTTTTCCCGCGTTAACAACTCCCCCCTTTTCTCTCACAAATAAGCCCTT
TCCATAACTTAATTCATATATTCTCTTATTTGCTCTTTCTTCACCAACAA
ACCCCCTAGCCATTTTTCCACACATCCTATTCTCTTCTCACTCGTATCGC
TATCACCTCTACCTTACTCTATACTTCATCTACTTCTCAACTCTTCTCTT
TACTTTACTGTTCCTCTAACCATATTCA

Query= MSMg01no313_m10.b1 MSMg01no313_m10.b1 CHROMAT_FILE:
MSMg01no313_m10.b1 PHD_FILE: MSMg01no313_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:52 2005
         (553 letters)



>mm_chr13_46618921_46619873
          Length = 953

 Score = 1044 bits (540), Expect = 0.0
 Identities = 549/552 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtctgcgaccacagagagaataaagcatgccggctttagccagagcctatggtttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 cagtctgcgaccacagagagaataaagcatgccggctttagccagagcctatggtttctt 693

                                                                       
Query: 61  ccactcttaggaactttcctaagcatcgttgtgagcaagggagggatggcatgcttccga 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ccactcttaggaactttcccaagcatcgttgtgagcaagggagggatggcatgcttccga 633

                                                                       
Query: 121 aaatcatggacacagctgccctggagcaaggatgagctgtgtcaccttgggatgtgtgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aaatcatggacacagctgccctggagcaaggatgagctgtgtcaccttgggatgtgtgaa 573

                                                                       
Query: 181 tatttcaagagtttccctggaagccaggagaatgtgcgtctctgcatttctcagtttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tatttcaagagtttccctggaagccaggagaatgtgcgtctctgcatttctcagtttaaa 513

                                                                       
Query: 241 tacgatgatcaggtcaccacagtttccaaacgcaagcttaacatcatctaaccacacgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tacgatgatcaggtcaccacagtttccaaacgcaagcttaacatcatctaaccacacgcc 453

                                                                       
Query: 301 tggctttgtacttcagcaactaaatatcagtagtcagagatggacgcagaactcgtggtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tggctttgtacttcagcaactaaatatcagtagtcagagatggacgcagaactcgtggtc 393

                                                                       
Query: 361 tattttggaaacccatcgctctggaagctgccgccggcagctctctcaaactatggaaca 420
           ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 392 tattttggaaacccatcgctctggaagctgccgccggcagcgctctcaaaatatggaaca 333

                                                                       
Query: 421 ggactctctgcacggctgaatccagcatctaatcccaaggggttgcaaaattagaagttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ggactctctgcacggctgaatccagcatctaatcccaaggggttgcaaaattagaagttg 273

                                                                       
Query: 481 ctcagctattcttttcctcttcacgtcagagcttctgattccactgcagttgaagggggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ctcagctattcttttcctcttcacgtcagagcttctgattccactgcagttgaagggggt 213

                       
Query: 541 gggggtggggtg 552
           ||||||||||||
Sbjct: 212 gggggtggggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no313_m10.g1 MSMg01no313_m10.g1 CHROMAT_FILE:
MSMg01no313_m10.g1 PHD_FILE: MSMg01no313_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:52 2005
         (262 letters)



>mm_chr13_46440937_46441598
          Length = 662

 Score =  507 bits (262), Expect = e-148
 Identities = 262/262 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaatgggtgggttctcaacatttgcttcaatttatactctgccaaagaattacacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaatgggtgggttctcaacatttgcttcaatttatactctgccaaagaattacacaaa 260

                                                                       
Query: 61  acatcagggtatgggtcctgccctccagaattactgatttaacactttgaggtagatctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatcagggtatgggtcctgccctccagaattactgatttaacactttgaggtagatctg 320

                                                                       
Query: 121 aaccttggaaatgttttaaagctctctgaatgattcacaaatgctgtacatattttaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaccttggaaatgttttaaagctctctgaatgattcacaaatgctgtacatattttaaga 380

                                                                       
Query: 181 ctgctgaataagaggggggtatgtataggagtgcattgacagcatgcacgtgaaaagagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgctgaataagaggggggtatgtataggagtgcattgacagcatgcacgtgaaaagagg 440

                                 
Query: 241 acttcagacatggaagcccatt 262
           ||||||||||||||||||||||
Sbjct: 441 acttcagacatggaagcccatt 462


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space:   165209
Effective search space used:   165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)