BAC Information

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BAC

Clone NameMSMg01-313P08
Chromosome13 (Build37)
Map Location 96,675,296 - 96,675,671
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2
Downstream geneSv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr, LOC100039456, LOC625662
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313P08.T7 (MSMg01no313_p08.b1)MSMg01-313P08.TJ (MSMg01no313_p08.g1)
ACCAG435735AG435736
length1,2741,270
length of high quality
(start - end)
319 (132 - 450)388 (69 - 456)
definitionCHROMAT_FILE: MSMg01no313_p08.b1 PHD_FILE: MSMg01no313_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:16 2005CHROMAT_FILE: MSMg01no313_p08.g1 PHD_FILE: MSMg01no313_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCGGACACTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATCCCCATCAAAACAACCCTGAGATTCC
ACTTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGAGACAGCAGA
TGCTGGCGTGGATGTGGAGAAAGAGGAACGCTCCTCCATTGTTGGTGGGA
TTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAA
AATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATA
TATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCATTATGTT
CTTAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCC
TCTTTTTTCACCCCCCCACACAGAAAATGTGCCACCTCTACAAAAAGGAG
GACTACTCACCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATG
GATAGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGA
ACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTAG
GATATCTAAGATATAAGATACAATTTGCTAAACACATGAAACTCAAGAAG
AAGGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAATTGGGAACAA
AACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGTTGAAAG
GATGGACCATGTAGAGACTGCCATATCCAGGGATCCACCCCATAATCAGC
ATCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTATTGAAAGGA
CCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTTACAACCCAG
AAGTGGATGCTCACAGCCCGCTTATGGGTGGATCACAGGGCTTCCCCATG
GCAGAACTTAGAGAAGGTACCCCCGAACCTAAGGGGATCCGCCCTCCCAT
TAATGGAACACCCTTATGTAACAATCCCGTATCCCCAACTCTTTGACCCA
ATGTCCATTGGTCCAAAAAAGGCTCTATCTCCCCCCTCTTGGAAAAGAAG
ACCCCTTTGCACCTCCCACTTATTTCTTCCCCCTCACGGAAACCCTTCGC
TCACTAAGATATTGGCTTCTTTCTCTTTCACCTACTTCCCTATCTCCCTT
CCTTCATCATCCTCTTTTTACTCT
NNCCCCCGACGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTGGGCCATATCCTGCTTCTGTTAGTGGCTT
CTAAATTATTAAAAAGGACCCCGCCAAAATGATTGCTTTCTTGGGAGAGG
AGAATCCAAGGATGGAGTAAAGAGAGCTATCTATCTTTTTTTTTTTTTTT
GGTAAGGAACTAGGAGAGAAGAGTGTGTATGTATGACAGACTTCCTGGAT
GGAAACAACACACACACACACACACACACACACACACTCTCTCTCTCTCT
CTCTAACACATTCACACTACACCACATAAAACACACAGACATACACACAG
CACACACAATGACACACACAACACACACACATACACACACACTATTTACA
CACACACACAGACACATACGCATACAACACAGAGACATACACACTTTTTT
TTTTTTCCCCCCCCCCGCANACAAACCTCCCTCCACACAAAAAAGGAGGG
GGGTNCNCNCNCNGACNCTTACNCTTACNACACATGCAACACACAGACAT
ACACACAACACATAGACAGACACACAACACACAGGTATGCACACGTGTAC
GCACACAAACACAATTTATTCAGAAAAGGAGCCTTTAACAAATTAAAGTA
ACAACTGCACCAACATCCAATTTAGTGAAGTTGCGAGTTTTATGGGGCTT
ACTTACAGGACAATGGGTGAGGGGTTACTTACAGCAGCAGAAATGACTCA
AACTTGGCTGCTTTATAAGAACCCCCCCCCAGCTGAGCACTAGCTCATGA
AAGTTGGAGACTGGGAGGTAGCACAACTGCATATAGCCCCTCAGGTTGAA
AAGAGTTTTTTTTTCAATGCTTAAGCGCGGCGGACCCCTTTCCAAAAAAG
CTCTGGCTCGTCTTTGTTTCCCCCTTGGCTGCCCACGCGGCCTCTTCCCC
TTTCACTGCTTTCGTATTATTGTTTCCTTCCCCTTTCCTTGCCATACCCC
CCTCCCCCGCTTCTATTTCATCTTAACTCCCTTTCCTTTCACTCTCCCAC
TCTGTACCTCTCCTCCCCCTTCCTTCTTTCACTCCCACCATCCTTTCTTC
TCCCTTATTTTTCTATCCTCCTTTCCTCCTCTATTCACTCCTCATCCCTT
TCCCCTTTCTTTCTCTTCCTCTTCTTCCCTCTCCTCCTCCTTTTCCCATC
TCCTCCTCTCTCTCTACCTTCTCCTGCTTGATTCATTTCTTCCCTCTATT
TCTCTATTCCTCCCTCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_p08.g1 MSMg01no313_p08.g1 CHROMAT_FILE:
MSMg01no313_p08.g1 PHD_FILE: MSMg01no313_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:16 2005
         (388 letters)



>mm_chr13_96675096_96675883
          Length = 788

 Score =  665 bits (344), Expect = 0.0
 Identities = 368/376 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgggccatatcctgcttctgttagtggcttctaaattattaaaaaggaccccgccaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||   | ||||
Sbjct: 201 actgggccatatcctgcttctgttagtggcttctaaattattaaaaaggacattgtcaaa 260

                                                                       
Query: 61  atgattgctttcttgggagaggagaatccaaggatggagtaaagagagctatctatcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgattgctttcttgggagaggagaatccaaggatggagtaaagagagctatctatcttt 320

                                                                       
Query: 121 ttttttttttttggtaaggaactaggagagaagagtgtgtatgtatgacagacttcctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttttttttttggtaaggaactaggagagaagagtgtgtatgtatgacagacttcctgg 380

                                                                       
Query: 181 atggaaacaacacacacacacacacacacacacacacactctctctctctctctctaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggaaacaacacacacacacacacacacacacacacactctctctctctctctctaaca 440

                                                                       
Query: 241 cattcacactacaccacataaaacacacagacatacacacagcacacacaatgacacaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattcacactacaccacataaaacacacagacatacacacagcacacacaatgacacaca 500

                                                                       
Query: 301 caacacacacacatacacacacactatttacacacacacacagacacatacgcatacaac 360
           |||||||||||||||||||||||| |   |||||||||||||||||||||||||||||||
Sbjct: 501 caacacacacacatacacacacacaacacacacacacacacagacacatacgcatacaac 560

                           
Query: 361 acagagacatacacac 376
           ||||||||||||||||
Sbjct: 561 acagagacatacacac 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 91
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)