BAC Information

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BAC

Clone NameMSMg01-315F10
Chromosome13 (Build37)
Map Location 50,494,061 - 50,494,429
singlet/doubletsinglet
Overlap genenone
Upstream geneIppk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632
Downstream geneEG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315F10.T7 (MSMg01no315_f10.b1)MSMg01-315F10.TJ (MSMg01no315_f10.g1)
ACCAG436011AG436012
length712687
length of high quality
(start - end)
373 (45 - 417)251 (53 - 303)
definitionCHROMAT_FILE: MSMg01no315_f10.b1 PHD_FILE: MSMg01no315_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:46 2005CHROMAT_FILE: MSMg01no315_f10.g1 PHD_FILE: MSMg01no315_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGG
AATTCATTATTAACCGATTGCCCCCCATCAACCACTGAGCAAATACAAAG
ATTATAACAAGAAAAAAGGTGATCTGCAATATGGTAGCTGAAATACAATC
CCTTGTGAATATTCTGGTTCAGATCCTGGAAACACTGAGGGGGACCCATC
AAAGGTACAAGGTTGTGAAGTGGAATCACTGACATCCCAGCTGGGTAACT
CATCCCTCACTTCTGAGGGTCTGTATGACACAAACCATAGCAGAGCAACA
AGCAGACCGAGCTGTGGTCATGCCAACCCTGAGATGCATAACTGTCCCTT
TGCATACAGAAGAATGGAGATGAACTACAGTTAGGAACTGAAAACCAGGG
AGCATATGATCCACATCCCACCCCAGGAAAGAGGAGGATGGGCTTTGACC
AGCTCCCCATGACCAAGGGTTATGACCTTCCATGTAGGTACAGGGGAAGT
GGAAACAAACACGAGCCAGGTCTCTCAGACCAGAGAGCCTGTGGCCCATG
TACAACAAAGATTGGAATGGGTCACTGTGCACATAGAAGCCCTGAGGGGC
ACAGACATTCACGCAGATACAGAGAAACTGGATAAACCCAGCAGCCACGT
GTTGACCATAAAGCCTTTGACCCTACTCAAAGTATAAACACAAGCATGGG
TTGTGGCTGCTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTACACAAC
AAAATTCAAGACCACTCAGTACCTTCCCCCTTCGAAAAGGACTTTCCTAA
CTCGCCCTAGCAGGCAAAGTGCAGAGCCAGATAAAAAATCTGGCTGACTA
AACAAATGTAAAAACATAGTTTTAATGGTCAAAATGACTGAGCCTATAAG
CTTCCAAAACAATATTAGCTGTTCTCAAAGAAAGAACCATAACAAGATAG
CAGCTCCCAGAAAAATCCCTCTGCCCCACCTCACACTAAAAACCTCAAGG
ACTTATTAAATGAGAGTCACCCTATCCAAGCCAAGCAATGTCTAATAAGG
TTATTACCTACACCAATTAAAATAAGCCAAACTACCTGGTGCCTATATCC
ACCCCCCACAAAAGTGTACACAGTAAGTTCTTTCTTCGTTCTGGGTCTCT
CTTCCAGCCTGCATGCTAAGAGGGGGTTCCCCAACATGTTGAATAAGTAA
AATCTTCCTGCTTTTTGCAAAGGTGACGGTCTCTGGGGTCTTTGTGTGAG
TGAGGGTCTTTTAAAAAACTACTACAGTTCCTGCCAAGTTACTGTCATTT
GCATCTTACGATCTCAAATTATGTTGTGTGTGTGAGTGTGCGCGCGTCCT
AGCAGATTAACCTCCTATCCGTGACTATTCTTCGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_f10.b1 MSMg01no315_f10.b1 CHROMAT_FILE:
MSMg01no315_f10.b1 PHD_FILE: MSMg01no315_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:46 2005
         (373 letters)



>mm_chr13_50493857_50494629
          Length = 773

 Score =  683 bits (353), Expect = 0.0
 Identities = 365/369 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcattattaaccgattgccccccatcaaccactgagcaaatacaaagattataac 64
           |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ggaattcattatgaaatgattgccccccatcaaccactgagcaaatacaaagattataac 514

                                                                       
Query: 65  aagaaaaaaggtgatctgcaatatggtagctgaaatacaatcccttgtgaatattctggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aagaaaaaaggtgatctgcaatatggtagctgaaatacaatcccttgtgaatattctggt 454

                                                                       
Query: 125 tcagatcctggaaacactgagggggacccatcaaaggtacaaggttgtgaagtggaatca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tcagatcctggaaacactgagggggacccatcaaaggtacaaggttgtgaagtggaatca 394

                                                                       
Query: 185 ctgacatcccagctgggtaactcatccctcacttctgagggtctgtatgacacaaaccat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ctgacatcccagctgggtaactcatccctcacttctgagggtctgtatgacacaaaccat 334

                                                                       
Query: 245 agcagagcaacaagcagaccgagctgtggtcatgccaaccctgagatgcataactgtccc 304
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 333 agcagagcaacaagcagaccgagctgtggccatgccaaccctgagatgcataactgtccc 274

                                                                       
Query: 305 tttgcatacagaagaatggagatgaactacagttaggaactgaaaaccagggagcatatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tttgcatacagaagaatggagatgaactacagttaggaactgaaaaccagggagcatatg 214

                    
Query: 365 atccacatc 373
           |||||||||
Sbjct: 213 atccacatc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)