BAC Information

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BAC

Clone NameMSMg01-315I20
Chromosome13 (Build37)
Map Location 74,426,100 - 74,426,446
singlet/doubletsinglet
Overlap geneAhrr
Upstream geneLOC100042864, Ndufs6, Mrpl36, Aytl2, Slc6a3, Clptm1l, Tert, Slc6a18, Slc6a19, Slc12a7, Nkd2, EG666360, Trip13, Brd9, Zdhhc11, LOC100042909, 2900041A09Rik, LOC621824, Cep72, Slc9a3, Exoc3
Downstream genePdcd6, Sdha, Ccdc127, AI595366, Zfp72, LOC666670, LOC634386, LOC100042547, LOC666683, LOC547136, BC012278, LOC434490, Arts1, Cast, LOC622204, EG544954, Pcsk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315I20.T7 (MSMg01no315_i20.b1)MSMg01-315I20.TJ (MSMg01no315_i20.g1)
ACCAG436163AG436164
length715738
length of high quality
(start - end)
573 (75 - 647)475 (75 - 549)
definitionCHROMAT_FILE: MSMg01no315_i20.b1 PHD_FILE: MSMg01no315_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:03 2005CHROMAT_FILE: MSMg01no315_i20.g1 PHD_FILE: MSMg01no315_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:03 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNGGAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCACTGACTCAACCTGTGGCTGGACATATGTTGAGGCCA
GCATCTCACAGGCCATCGTGCTCTAGCTCATAGCCACTGCTCGCCACACA
TCTCTCTATCCATCCAAACCCTTCTGTTTCCCCAACCCTGCTCCTTTAGG
TATTCTCCCCTTCAGCCTGAAAGATTTCCTCTGACCTCATCACTCTTGAA
GCTCCCTGCTCTTTCTATGGTTCAACTGTAGTGGTTTCTAGGCCCATATG
TGATATGACTTGTCGATGTTTTCTGCAATTCTATGCGCTGTCCTTTTACT
TTCTTTTAAAGTTACAAATGTTTTACATTTTGTGGGGATGAGTGTGCAGT
TATTTCTGTGCACCACACACACGCCTGCTGATCATCAATGGTTGTATGCT
ACCATGTGGGTACTGGAAGTGAAACCTAGGTCCTCTGTAAGAACAGCAAA
AGCTCTTAACTGCTAAGACAGCTCTCTCGTGCCTCCTTTACTTTCTTGCT
AGTTAGTGTACTTTGAGACAAAAGTTTTATTTTGGTGAAATCTGATTTAG
CTGTCTTTTTTTTTTTTAATTTTGTTATTTGTGTTTTTGATGCCAAAACA
AAGGATGTTGTCACACTTAAGGACACGAAGGCTTATATTATTTTTGTTCA
TTATAATCCTCTTGT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATCATCATTGCGCTTTGGAGTACGCA
GCCCTGACTGGAATGCCCCTCTCACACCGTTCCCCTCCAGGTTCAGGGAT
TTATGCAGAAGAGTATGCAGAGGTGGTGGGTGACTTCAAGAAAACAGTGT
TTTCCAGACACAGCAGGGTTGACGAACATATGACCTGTGACAGAATGCAC
AGACCTGTACAAGTTCAAGCCAGACAGAATTCCAGCGTGGAGAAGAGGAA
GTGAGCACAAAGTCCCATTCTAACAGAGAAGCTATTCGCAAGTGATAGCT
GCTTGGAGACAGAAAATTAGTTGTGTCCGTGGAGTGACCAGGTTATACCA
ACTACACTCTAGGACAGGCCCCACGGTTAAGAGTAGTTGGCTAACACAAA
TGGACACCATATTTTTGTTGTTGTTTGGTTGATTTTTTTTTTTGAGAGAG
AGAGAGAAAGAACATGGAGTTGAGTGGTAGGTAAGATCTTGGGGAGTTGA
TGTAGTATACTTTATCTTGCCCTTTTTTTTCTTCTCTTCTCTATCCTGCT
TTACTATTTTTTACTTTTTTTCCTATTGACTCCTTTTTTTTTTTTTTTAT
TCTTCTTCTCGAGTAGTATTAAATGTATATTCCCTTTTTACCCTCCGTCC
CAATCTTACTTTTCTCTCTCTCCCTCCCCTTTCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_i20.b1 MSMg01no315_i20.b1 CHROMAT_FILE:
MSMg01no315_i20.b1 PHD_FILE: MSMg01no315_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:03 2005
         (573 letters)



>mm_chr13_74425884_74426856
          Length = 973

 Score =  594 bits (307), Expect = e-174
 Identities = 335/347 (96%), Gaps = 6/347 (1%)
 Strand = Plus / Minus

                                                                       
Query: 233 gacttgtcgatgttttctgcaattctatgcgctgtccttttactttcttttaaagttaca 292
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gacttgtcaatgttttctgcaattctatgcgctgtccttttactttcttttaaagttaca 504

                                                                       
Query: 293 aatgttttacattttgtggggatgagtgtgcagttatttctgtgcaccacacacacgcct 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 503 aatgttttacattttgtggggatgagtgtgcagttatttctgtgcaccacacacatgcct 444

                                                                       
Query: 353 gctgatcatcaatggttgtatgctaccatgtgggtactggaagtgaaacctaggtcctct 412
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggtgatcatcaatggttgtatgctaccatgtgggtactggaagtgaaacctaggtcctct 384

                                                                       
Query: 413 gtaagaacagcaaaagctcttaactgctaagacagctctctcgtgcctccttt-actttc 471
           |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 383 gtaagaacagcaaaagctcttaactgctaagacatctctctcgtgcctccttttactttc 324

                                                                       
Query: 472 ttgctagttagtgtactttgagacaaaagttttattttggtgaaatctgatttagctgtc 531
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 323 ttgctagttagtgtactttgagacaaaagttttattttggtgaaatccgatttagctgtc 264

                                                          
Query: 532 tttttttttttt-----aattttgttatttgtgtttttgatgccaaa 573
           ||||||||||||     |||||||||| |||||||||||||||||||
Sbjct: 263 ttttttttttttttttaaattttgttacttgtgtttttgatgccaaa 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)