Query= MSMg01no316_a09.b1 MSMg01no316_a09.b1 CHROMAT_FILE:
MSMg01no316_a09.b1 PHD_FILE: MSMg01no316_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:40 2005
(636 letters)
>mm_chr13_46027474_46028510
Length = 1037
Score = 1120 bits (579), Expect = 0.0
Identities = 621/637 (97%), Gaps = 5/637 (0%)
Strand = Plus / Minus
Query: 1 cccgagtattccaggcactgcttcctgacagctcttactgtagggattggcaccagcaaa 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 cccgagtattctaggcactgcttcctgacagctcttactgtagggattggcaccagcaaa 648
Query: 61 g-aaaaaaaatgtacagtttagatacttaagagcaaataattgctggggatgctttaaat 119
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gaaaaaaaaatgtacagtttagatacttaagagcaaataattgctggggatgctttaaat 588
Query: 120 agctcaggaaatgtgtcgggtgtttacttgacatttgctgtattgaacactaatactgaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 agctcaggaaatgtgtcgggtgtttacttgacatttgctgtattgaacactaatactgaa 528
Query: 180 acatttctttgaccacagagaatgcctgggtgggtggggtgggggcaggcatgagcagaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 acatttctttgaccacagagaatgcctgggtgggtggggtgggggcaggcatgagcagaa 468
Query: 240 gagagagggaaacagccgccatgattcactcgcagccaaatggtaaatgaagttggtccg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gagagagggaaacagccgccatgattcactcgcagccaaatggtaaatgaagttggtccg 408
Query: 300 aatatggagatgccaggggaataaatgaccgtttgtttgattgtgcacccccggagggcg 359
||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||
Sbjct: 407 aatatggagatgccaggggaataaatgaccgtttgtttgattgtgtagccttggagggcg 348
Query: 360 gtggcagcaagcagaacgcaaagcccaaacaactccctcggattaggtttccatggctgg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gtggcagcaagcagaacgcaaagcccaaacaactccctcggattaggtttccatggctgg 288
Query: 420 gagttgtcttcatcacaattgtcagagcctttgagcccttggctgctctgagttttcaag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gagttgtcttcatcacaattgtcagagcctttgagcccttggctgctctgagttttcaag 228
Query: 480 gtcctcaaagcgggatgaatgacttccttatttctgtgtttatttatttatttatttatc 539
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 227 gtcctcaaagcgggatgaatgacttccttatttctgtgtttatttatttctttat----c 172
Query: 540 tatttgtttaaatagtgcttgttatctgctttgtctacacatgcttgtgttgtgtagagg 599
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tatttatttaaatagtgcttgttatctgctttgtctacacatgcttgtgttgtgtagagg 112
Query: 600 gactccagtgaccttgttcttgtttggcttggtttgg 636
||||||||||||||| || |||||| | |||||||||
Sbjct: 111 gactccagtgaccttatttttgttttgtttggtttgg 75
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1037
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1027
Effective search space: 642902
Effective search space used: 642902
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_a09.g1 MSMg01no316_a09.g1 CHROMAT_FILE:
MSMg01no316_a09.g1 PHD_FILE: MSMg01no316_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:40 2005
(309 letters)
>mm_chr13_45847016_45847724
Length = 709
Score = 567 bits (293), Expect = e-166
Identities = 307/313 (98%), Gaps = 4/313 (1%)
Strand = Plus / Plus
Query: 1 acaattccttgtgacttagttataatagttgaccatcatcttctagcagattttcaaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 acaattccttgtgacttagttataatagttgaccatcatcttctagcagattttcaaaag 256
Query: 61 tactttcatggacttcacaaaaaa-ttctcaggagccataaaaaacaaacaaacaaacaa 119
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 257 tactttcatggacttcacaaaaaaattctcaggagccataaaaaacaaataaacaaacaa 316
Query: 120 acaaacaaacaaacaaaa---ccaaagaaatgagatgctttctgtgagataggatgtcat 176
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 317 acaaacaaacaaacaaaaaaaccaaagaaatgagatgctttctgtgagataggatgtcat 376
Query: 177 atgttaatgagtcaggggctcacataattacataacctctctgattactttgcatgatga 236
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atgttaatgagtcaggggctcgcataattacataacctctctgattactttgcatgatga 436
Query: 237 gtttatttttcccatctaaactagaaccaactacctcaacatgttacactgaaagtttct 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtttatttttcccatctaaactagaaccaactacctcaacatgttacactgaaagtttct 496
Query: 297 ttaaacaaaacaa 309
|||||||||||||
Sbjct: 497 ttaaacaaaacaa 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space: 210000
Effective search space used: 210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
