XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGNAAATCCGCGGAATTC
AGGCAGATTTACAGACAAATAAATTTTATGCCTGAGCCTAGCCTTTTCTT
TTTTATATTAACTATAGGACCGAGATATAACCTCCCCTCCCCAGCCTGAA
ACCTATTTGCTCAGGTTTCAGTGTTAGAGAACATGGGGGGGGGGCAGAGC
TTGCTGCGCTATTGTCCTGCCACTCCCACTGCCTGCCTCTTAGCTGTTCC
GGAGCCATCATGTGTTCACCTGCAACCTTACCCCAAGATGATTTGGTGAG
AATCCTCCTGGGAATTCTCAACTCAAAGATATGGCTTCTGGTTTCTATCT
GCACACCTGAACTAACCTTGTGCCAAGGCTCTCTGCAACACAATTCTGCC
CAGAGTATAAACTTACGCCCAAAGAGTGCTGACAAACCTAATCTCAGGGT
CACAGGCTCACAGGACTTAAAAACTCCAGTCAGAGACAGCAAGATCACCT
AACACCAGAGACAACCAGATTGTAAGAGGAAAGCCTAAAAACATAAACAA
CAGAATCCAAGGCTACGTGGCATCATTAGAACCCAATTCTCCCACCACAG
GAAACCCTGGATACTCAAACACACCTGAAAAACAAGATTCTGATTTTAAA
ATCACATCTGATGATTATGATAGTGGACTTTAAGAAGTACATAATTCCCA
TAAAGAGATACTGGAGAACACAAGAAAACAGGAAGCAGCCCTT

CCATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTACAAAATACTTTGTTAACTCTGTGCCCCAATTTTTAATG
GGGCTATATGTATTTCTGCAGTTCAGCTTCTTGAATTGTTTGTATATATT
GGACATTACTTCCCTATCAGGTTTATGATTGGTAAAAATTCTTTCCCAAT
TTTTGGTGGCCTATTTGTCTTATTGAGAGAATCTTTTGCCCTACAGAATC
TTTGCAATTTTATGAGATCCCATTTGCCTATACTTTATCTTACAGCACAG
ACCATTGCTGATCTCTTTTGATTTTTTCCCTGTGCTCATATCTTCAAGGC
TTTTCCCTGTTTTCTCTTATATAAATTTCAGTGACTATGGTTTTTTTGTA
GAGTTCATTGACCCACTTAGACATGAGATTTGTACAAGGAGATAAGAATG
GGTCATTTTTCATTCTTCTACATGATAACCACCAGTTGTGCCAGCACCAT
TTGTTGAAAATGCTGTCTTTTTGTCACTGGATGGTTTTAGCTCCCTTGTA
AAAGATCAAGTAACCATAGGTGTGTGGGTTCATTTCTGAGTCTTCAGTTC
TATTTCATTGATCTACCTGTCTGTCGCTGTACCAGTACCATGCAATTTTT
ACCACAATTGCTCTGNAGAACAGCTTGAGGTCAGGCATGGTCATTCCACC
AGAGGTTCTTTTATTGCTTAGAATAGTTTTTGCTATCCTN

Query= MSMg01no316_l15.b1 MSMg01no316_l15.b1 CHROMAT_FILE:
MSMg01no316_l15.b1 PHD_FILE: MSMg01no316_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:33 2005
         (600 letters)



>mm_chr13_33463596_33464596
          Length = 1001

 Score = 1100 bits (569), Expect = 0.0
 Identities = 593/601 (98%), Gaps = 1/601 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatataacctcccctccccagcctgaaacctatttgctcaggtttcagtgttagagaac 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 agatataacctcccctccccagcctgaaacctgtttgctcaggtttcagtgttagagaac 260

                                                                       
Query: 61  atgggggggggg-cagagcttgctgcgctattgtcctgccactcccactgcctgcctctt 119
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgggggggggggcagagcttgctgcgctattgtcctgccactcccactgcctgcctctt 320

                                                                       
Query: 120 agctgttccggagccatcatgtgttcacctgcaaccttaccccaagatgatttggtgaga 179
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 agctgttccggagccatcatgtgttcacctgcaaccttactccaagatgatttggtgaga 380

                                                                       
Query: 180 atcctcctgggaattctcaactcaaagatatggcttctggtttctatctgcacacctgaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcctcctgggaattctcaactcaaagatatggcttctggtttctatctgcacacctgaa 440

                                                                       
Query: 240 ctaaccttgtgccaaggctctctgcaacacaattctgcccagagtataaacttacgccca 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 ctaaccttgtgccaaggctctctgcaacacaattctgcccagagtataaacttatgccca 500

                                                                       
Query: 300 aagagtgctgacaaacctaatctcagggtcacaggctcacaggacttaaaaactccagtc 359
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggagtgctgacaaacctaatctcagggtcacaggctcacaggacttaaaaactccagtc 560

                                                                       
Query: 360 agagacagcaagatcacctaacaccagagacaaccagattgtaagaggaaagcctaaaaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agagacagcaagatcacctaacaccagagacaaccagattgtaagaggaaagcctaaaaa 620

                                                                       
Query: 420 cataaacaacagaatccaaggctacgtggcatcattagaacccaattctcccaccacagg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cataaacaacagaatccaaggctacgtggcatcattagaacccaattctcccaccacagg 680

                                                                       
Query: 480 aaaccctggatactcaaacacacctgaaaaacaagattctgattttaaaatcacatctga 539
           |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 681 aaaccctggatactcaaacacacctgaaaaacaagattttgatttaaaaatcacatctga 740

                                                                       
Query: 540 tgattatgatagtggactttaagaagtacataattcccataaagagatactggagaacac 599
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 741 tgattatgatagtggactttaagaagtacataattcccataaagagatacaggagaacac 800

            
Query: 600 a 600
           |
Sbjct: 801 a 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1001
Length adjustment: 10
Effective length of query: 590
Effective length of database: 991
Effective search space:   584690
Effective search space used:   584690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)