Query= MSMg01no316_o02.b1 MSMg01no316_o02.b1 CHROMAT_FILE:
MSMg01no316_o02.b1 PHD_FILE: MSMg01no316_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:45 2005
(605 letters)
>mm_chr13_33070137_33071141
Length = 1005
Score = 1058 bits (547), Expect = 0.0
Identities = 588/605 (97%), Gaps = 8/605 (1%)
Strand = Plus / Minus
Query: 5 gaattcccttatccttcc----gctttacaaaataactggaacattagacatgctgccaa 60
||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 992 gaattcccttatc---ccaaatgctttacaaaataactggaacattagacatgctgccaa 936
Query: 61 aaaagctgtagccctgcctcatccaggtggctgaggtagaaaggtctcaagttcaagatg 120
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 aaaagctgtagccctggct-atccaggtggctgaggtagaaaggtctcaagttcaagatg 877
Query: 121 tactcaagcttcagaaagagtttagggccagcctgggcaactcaatgacacgctctctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 tactcaagcttcagaaagagtttagggccagcctgggcaactcaatgacacgctctctca 817
Query: 181 aaagaagaagacattctttttgaaggaaattgtagatataatttattgtatagtacattg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 aaagaagaagacattctttttgaaggaaattgtagatataatttattgtatagtacattg 757
Query: 241 ccttgcatgtaaatcttcagtactgtaaaaatacattgtttatcttcagtattgtaaaat 300
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 756 ccttgcatgtaaatcttcagtactgtaaaaatacatagtaaatcttcagtattgtaaaat 697
Query: 301 aaattactaagtaaccaaaaaattgagatcccagtattgctgcagagaggatgaagggtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 aaattactaagtaaccaaaaaattgagatcccagtattgctgcagagaggatgaagggtg 637
Query: 361 ctcacttggataaagcccatctcatgatggttcacagtgtggtaaagttacttcagtatt 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ctcacttggataaagtttatctcatgatggttcacagtgtggtaaagttacttcagtatt 577
Query: 421 gaaggttacagtctaggaaaaggttaatgttgggatcaaggggttacattaaaccctgta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gaaggttacagtctaggaaaaggttaatgttgggatcaaggggttacattaaaccctgta 517
Query: 481 agaatgactcattcataaggaatctgaaccttatatactgctcaacactcttgcatgatc 540
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 516 agaatgactcattcataaggaatctgaaacttatatactgctcaacactcttgcatgatc 457
Query: 541 ctgtttttgtgaaaccattttccctggagctgtacagaagccccaactatgttctgcagc 600
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 456 ctgtttttgtgaaaccattttccctggaactgtacagaagccccaactatgttctgcagc 397
Query: 601 ttcca 605
|||||
Sbjct: 396 ttcca 392
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_o02.g1 MSMg01no316_o02.g1 CHROMAT_FILE:
MSMg01no316_o02.g1 PHD_FILE: MSMg01no316_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:45 2005
(429 letters)
>mm_chr13_32907805_32908633
Length = 829
Score = 748 bits (387), Expect = 0.0
Identities = 419/433 (96%), Gaps = 8/433 (1%)
Strand = Plus / Plus
Query: 1 agaataaatattagaacctttgaaccagaatgttttactgaagttaaattacgatgtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaataaatattagaacctttgaaccagaatgttttactgaagttaaattacgatgtgct 260
Query: 61 gcaaatgagaagttgagccttgagtgtgttggtaatgaacactggtttctattgcaggcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaaatgagaagttgagccttgagtgtgttggtaatgaacactggtttctattgcaggcc 320
Query: 121 ctctgtcttcatagaagataaagcagtggacactctggcttacctcagtgatggagatgc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 ctctgtcttcatagaagataaagcagtggacactctggcttacctcagtgatggtgatgc 380
Query: 181 ccggacgggcttgaatggactgcaactggcagtgctggccaggttaagctctaggaagat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 ccggacgggcttgaatggactgcaactggcagtgctggccaggttaagctctaggaaggt 440
Query: 241 gttctgtaataagagcggtcaaacctattctcctagtcgagttctgatcactgagaatga 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttctgtaagaagagcggtcaaacctattctcctagtcgagttctgatcactgagaatga 500
Query: 301 tgtgaaagaaggcctacagcgttcccacattttatatgaccg--ccgccccg--aggagt 356
||||||||||||||||||||| |||||||||||||||||||| | | | ||||||
Sbjct: 501 tgtgaaagaaggcctacagcggtcccacattttatatgaccgtgcag----gtgaggagt 556
Query: 357 tgaacgatgggaaaagtagaggtgcagtgacaaatgtgcccacagctctttccaccctct 416
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 557 tgaacgatgggaaaagtagaggtgcagggacaaatgtgcccacagctctttccaccctct 616
Query: 417 gaccttcagccag 429
|||||||||||||
Sbjct: 617 gaccttcagccag 629
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space: 344400
Effective search space used: 344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
