BAC Information

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BAC

Clone NameMSMg01-317D23
Chromosome13 (Build37)
Map Location 64,991,622 - 64,992,317
singlet/doubletsinglet
Overlap geneCntnap3
Upstream gene9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470
Downstream geneEG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317D23.T7 (MSMg01no317_d23.b1)MSMg01-317D23.TJ (MSMg01no317_d23.g1)
ACCAG437372AG437373
length744748
length of high quality
(start - end)		700 (45 - 744)365 (384 - 748)
definitionCHROMAT_FILE: MSMg01no317_d23.b1 PHD_FILE: MSMg01no317_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:14 2005CHROMAT_FILE: MSMg01no317_d23.g1 PHD_FILE: MSMg01no317_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGAACCCTCATCAAAATCTGGGTGGGCATGGTTGCAGCCAGTAAT
CTCAACACCCAAGAACCAGAGATAGGGGATTTCTGGAGCAATATCAGCCA
ATCAACAAGTTCTATATTCAATGAGAGATCCTACCTTAATAAAGGGGAGA
GGAGTTGTTAGCAACACACACACCCCATCTACTTAAGTCCTCTATATGCA
CACACACACACAAAACCATTGCATATGAATATGTACATACAATCATACAC
CATTTTCTCAATTAAACAGTAATTGGAAATGGTTTAGAGTTATCCTCATG
CTCCAGTGAACAAAGTTGTAAGCTATATTTATAATTCAAGAGCAAGAAAT
GACATACAAAAATTTCCTGAGCGACTACTATTGGTATTTTTCTATTATGT
CCATATTTTGGCAGTCTTTAGCCTTTGATTGACTGGGGGATTCAGTCATT
ATAATTCACTCTCTGACTATATGAGCAGGTCAAATAATACGGCAAGTTCA
ATTAGAGTTCACTATGTATGAAAAAAACTTTCAGTCAAAGTTAAAATATG
TACAGTGATAATTTTAAGCAAAACTTAATTCAACTTAACAATGACAGTAT
AAGAGCCTAGCATGGTTGCCTTCCAAGAGGCCCAACAAGCAACTAANAGA
GTCAGATGCAGACACTAGCATACAACCAAAGGACAGAAGCCAGG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTCACCTGTCTTGGAGTAGCCAGAGT
TGGTATTTGAGTCACAGTCCTTTCTCTAGCCTCTGTCAGCCACTGTTTTC
CATCCCGGAGGGTATATCTCAAGTAGACCACTTCCATCTGACACAGCTGG
GCTTTTTTAGCTGGGCTTTTTTAGCAGAGGCCCGGTAACCCAACTCACCC
AGTTCTGCTAGCAATCTCTTGGTCCCCTGCCAGCATTCTCTTCCGTGGTT
GCAACAAGGAGCAACATATTGAAGCAGAGTTACCTGGGAATTTTCAGCTC
GGAAGGAGGCTAATTCTCGATGTAGAGCCTCATCAAAAAGGGTGGGGGAG
TTTTTGAACTCCTGGGGTAACCACATCCAGGTCAATTGTCCTGTTTGTCC
AGTGTCAGGATCTCTCCACTCAAAGACGAATATGGGCTGGCTGGAGGGAT
GTAACTTCAGGCAAAAGAAAGCATCTTTTAAATCAAGTACTGTATACCAT
TTTCGCTCCAGAGGGAGTGAGCTGAGGAGGTTATAGGGATTAGGAACAGT
TGGGTGAATATCTTGGACCCTCTTATTGACCTCTCTCAGGTCTTGGACTG
GTCAGTAGTCACTCGTGCCAGGTTTCTTTACCGACAGTAAAGGAGTATTC
CAGGGTGACTGGCAAGGTACCAAAATACCTAATTGTAATAGTCTCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_d23.b1 MSMg01no317_d23.b1 CHROMAT_FILE:
MSMg01no317_d23.b1 PHD_FILE: MSMg01no317_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:14 2005
         (700 letters)



>mm_chr13_64991432_64992531
          Length = 1100

 Score = 1317 bits (681), Expect = 0.0
 Identities = 692/696 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagaaccctcatcaaaatctgggtgggcatggttgcagccagtaatctcaacac 64
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 gaattccagaacccacataaaaatctgggtgggcatggttgcagccagtaatctcaacac 827

                                                                       
Query: 65  ccaagaaccagagataggggatttctggagcaatatcagccaatcaacaagttctatatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 ccaagaaccagagataggggatttctggagcaatatcagccaatcaacaagttctatatt 767

                                                                       
Query: 125 caatgagagatcctaccttaataaaggggagaggagttgttagcaacacacacaccccat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 caatgagagatcctaccttaataaaggggagaggagttgttagcaacacacacaccccat 707

                                                                       
Query: 185 ctacttaagtcctctatatgcacacacacacacaaaaccattgcatatgaatatgtacat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ctacttaagtcctctatatgcacacacacacacaaaaccattgcatatgaatatgtacat 647

                                                                       
Query: 245 acaatcatacaccattttctcaattaaacagtaattggaaatggtttagagttatcctca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 acaatcatacaccattttctcaattaaacagtaattggaaatggtttagagttatcctca 587

                                                                       
Query: 305 tgctccagtgaacaaagttgtaagctatatttataattcaagagcaagaaatgacataca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tgctccagtgaacaaagttgtaagctatatttataattcaagagcaagaaatgacataca 527

                                                                       
Query: 365 aaaatttcctgagcgactactattggtatttttctattatgtccatattttggcagtctt 424
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aaaatttcctgagtgactactattggtatttttctattatgtccatattttggcagtctt 467

                                                                       
Query: 425 tagcctttgattgactgggggattcagtcattataattcactctctgactatatgagcag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tagcctttgattgactgggggattcagtcattataattcactctctgactatatgagcag 407

                                                                       
Query: 485 gtcaaataatacggcaagttcaattagagttcactatgtatgaaaaaaactttcagtcaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gtcaaataatacggcaagttcaattagagttcactatgtatgaaaaaaactttcagtcaa 347

                                                                       
Query: 545 agttaaaatatgtacagtgataattttaagcaaaacttaattcaacttaacaatgacagt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agttaaaatatgtacagtgataattttaagcaaaacttaattcaacttaacaatgacagt 287

                                                                       
Query: 605 ataagagcctagcatggttgccttccaagaggcccaacaagcaactaanagagtcagatg 664
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 286 ataagagcctagcatggttgccttccaagaggcccaacaagcaactaaaagagtcagatg 227

                                               
Query: 665 cagacactagcatacaaccaaaggacagaagccagg 700
           ||||||||||||||||||||||||||||||||||||
Sbjct: 226 cagacactagcatacaaccaaaggacagaagccagg 191


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space:   752100
Effective search space used:   752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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