BAC Information

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BAC

Clone NameMSMg01-320E19
Chromosome13 (Build37)
Map Location 64,660,440 - 64,855,487
singlet/doubletdoublet
Overlap genePpia-ps13_866.1, LOC238678, LOC631470, Cntnap3
Upstream genePtch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298
Downstream geneEG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320E19.T7 (MSMg01no320_e19.b1)MSMg01-320E19.TJ (MSMg01no320_e19.g1)
ACCAG439571AG439572
length716711
length of high quality
(start - end)
299 (70 - 368)590 (76 - 665)
definitionCHROMAT_FILE: MSMg01no320_e19.b1 PHD_FILE: MSMg01no320_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:47 2005CHROMAT_FILE: MSMg01no320_e19.g1 PHD_FILE: MSMg01no320_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,660,440 - 64,660,738)(64,854,905 - 64,855,487)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACATTTCATAACCAAAGTATTTCTCTGGCAATGTTATTTGTATTT
TGAGGAGGGCACCTCCTTCTTTCCCCAGCCCCACTGCTTTTCAGTGCATC
CCACGAACGGGGTTTTTATAGTGACCTCTGTTTCTTCAAGCCTGAAACAT
TATTCTTTGATTTGGTATTGGAGTTAACTGAAAATAAGGCTCAAAATAAT
TGTTGTGCTTTTATAGATCTTTTTGTCAACTCTTTTTTTGCCCTGAGGAT
TTTCTTTGTGACATTAATAGCATTAATTTTTTGTGGGGGCATATTTTGTC
TATTTCTGTTGTGTATGTTCTGCTGCCCCTGTCCTTCAGAAAATCCAAGG
TTGTTGGCTTTAATTCTATTACATAACATAAATGGAAGTGTTGTGTTTAC
AGAAATTCTGCTCCCCCCTCTTTTTCTCTTTATGTTTGTGATGCATGTGA
TATGTGGCTTGTGTTTGGTTTGTATATGTGTGCTGTATATGTGAATGAGA
ACCTACGTGTGCCACAACTAACATGTGGAAGTCGGAGGATAATCTTGGAT
GTCAGCGATTGACTTGACTTGTTTAAAGTAGGGTCTCTTGCTCTTGGCTG
TTTATTCCAAGATAACTGGCTCCTTGACTGCTGAAGGATCTCTTGTTTCC
ACCTCCTCTCTCACAT
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTCTCCTTCTGCTGTCTATGGATC
CAGATACAGAACTCTTGGCTCCTCCAGCACCAAGTCTGCCTGCCTGCTGC
ATGCTTCCTATCATGATGACAATGAACTAAACCTCTGAAACTGGAAGCCA
GCCCATAAATTGAATGGTTTCTTTTATAACAGTTGTTGTGGTCTTGTTGT
CTCCTCACAGCAATAAAACCTAAATTAAGACAACAATTATCTCATGCTTT
CTTTCCTACGTGGAAGCTAGACATGGAAGCCTTTCAGAATCCTGGTCTTG
CATCCCCTGTCTCTGTCATCATCCCCATCATCAGACTGCTATGTTTTATG
ATTATTATTTATAACTAGGTCTTATTTCTTTATTCTTTATTTCTTTATTC
TTTGTTCATATGCTTAAAGATCAGAGTTGTGGATAGTGTAAGCTTTTCTT
TAGTTTGCTTACTTATTACTTTAATGTTATTGTTCTCAGAAAACTGTATT
TTGCTTATTTATTACTTCAATGTTATTTTTCTTTAGCTTGCTTATTTATT
ACTTTAATGTTATTTTTCTTATAAGGGAAACTATATTTTGCTATGTTGCT
TTTCAGACTACTCCAGTCTCAAAATCCAAGCAATAAGCTCTCACTTATTG
ATGCATCTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_e19.b1 MSMg01no320_e19.b1 CHROMAT_FILE:
MSMg01no320_e19.b1 PHD_FILE: MSMg01no320_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:47 2005
         (299 letters)



>mm_chr13_64660240_64660938
          Length = 699

 Score =  563 bits (291), Expect = e-165
 Identities = 297/299 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtatttctctggcaatgttatttgtattttgaggagggcacctccttctttccccagc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 201 aagtatttctctggcaatgttatttgtattttgaggagggcacctccttctttttccagc 260

                                                                       
Query: 61  cccactgcttttcagtgcatcccacgaacggggtttttatagtgacctctgtttcttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccactgcttttcagtgcatcccacgaacggggtttttatagtgacctctgtttcttcaa 320

                                                                       
Query: 121 gcctgaaacattattctttgatttggtattggagttaactgaaaataaggctcaaaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctgaaacattattctttgatttggtattggagttaactgaaaataaggctcaaaataa 380

                                                                       
Query: 181 ttgttgtgcttttatagatctttttgtcaactctttttttgccctgaggattttctttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgttgtgcttttatagatctttttgtcaactctttttttgccctgaggattttctttgt 440

                                                                      
Query: 241 gacattaatagcattaattttttgtgggggcatattttgtctatttctgttgtgtatgt 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacattaatagcattaattttttgtgggggcatattttgtctatttctgttgtgtatgt 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no320_e19.g1 MSMg01no320_e19.g1 CHROMAT_FILE:
MSMg01no320_e19.g1 PHD_FILE: MSMg01no320_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:47 2005
         (590 letters)



>mm_chr13_64854498_64855487
          Length = 990

 Score = 1120 bits (579), Expect = 0.0
 Identities = 582/583 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttctgctgtctatggatccagatacagaactcttggctcctccagcaccaagtctgcctg 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 ttctgctgtctatggatccagatacagaactcttggctcctccagcaccaagtctgcctg 931

                                                                       
Query: 68  cctgctgcatgcttcctatcatgatgacaatgaactaaacctctgaaactggaagccagc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 cctgctgcatgcttcctatcatgatgacaatgaactaaacctctgaaactggaagccagc 871

                                                                       
Query: 128 ccataaattgaatggtttcttttataacagttgttgtggtcttgttgtctcctcacagca 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 ccataaattgaatggtttcttttataacagttgttgtggtcttgttgtctcctcacagca 811

                                                                       
Query: 188 ataaaacctaaattaagacaacaattatctcatgctttctttcctacgtggaagctagac 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 ataaaacctaaattaagacaacaattatctcatgctttctttcctacgtggaagctagac 751

                                                                       
Query: 248 atggaagcctttcagaatcctggtcttgcatcccctgtctctgtcatcatccccatcatc 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 atggaagcctttcagaatcctggtcttgcatcccctgtctctgtcatcatccccatcatc 691

                                                                       
Query: 308 agactgctatgttttatgattattatttataactaggtcttatttctttattctttattt 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 agactgctatgttttatgattattatttataactaggtcttatttctttattctttattt 631

                                                                       
Query: 368 ctttattctttgttcatatgcttaaagatcagagttgtggatagtgtaagcttttcttta 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ctttattctttgttcatatgcttaaagatcagagttgtggatagtgtaagcttttcttta 571

                                                                       
Query: 428 gtttgcttacttattactttaatgttattgttctcagaaaactgtattttgcttatttat 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gtttgcttacttattactttaatgttattgttctcagaaaactgtattttgcttatttat 511

                                                                       
Query: 488 tacttcaatgttatttttctttagcttgcttatttattactttaatgttatttttcttat 547
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 510 tacttcaatgttatttttctttagtttgcttatttattactttaatgttatttttcttat 451

                                                      
Query: 548 aagggaaactatattttgctatgttgcttttcagactactcca 590
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aagggaaactatattttgctatgttgcttttcagactactcca 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)