BAC Information

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BAC

Clone NameMSMg01-320J07
Chromosome13 (Build37)
Map Location 48,287,318 - 48,287,501
singlet/doubletsinglet
Overlap genenone
Upstream geneIbrdc2, 4931429P17Rik
Downstream geneId4, LOC667351, Zfp169, A830005F24Rik, AW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320J07.T7 (MSMg01no320_j07.b1)MSMg01-320J07.TJ (MSMg01no320_j07.g1)
ACCAG439776AG439777
length694763
length of high quality
(start - end)
186 (122 - 307)184 (184 - 367)
definitionCHROMAT_FILE: MSMg01no320_j07.b1 PHD_FILE: MSMg01no320_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:07 2005CHROMAT_FILE: MSMg01no320_j07.g1 PHD_FILE: MSMg01no320_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGAGACCGCGGAATTCACCCA
TTGCCACAAAAGAAGTCCACAACCTTGAGTTCTTAGCTAGATTTACAATA
CCAGTCTTGTGCTTCCACTTGTGGAAGGAACAAGCCTGAAATCTAACCAT
AAAGCTGATATTTAAACAAGACTCTCTTAATGGTCCATCCTTTCCTACTT
ACAGTCAAAACTATGATTTGCTTGATCTTGACTTCCAGTTTCTCCTTAAG
GAAACAGCTTTCTACATCTGGTTCAAATACCACATTTAGGAGAAGAGTGA
GGCCCTTTTATTTTATGGAGGACCCTTGGGGTCTGGACCCATGTTGTTTT
GTCATTTCGCCCCCCTCCCGCCCTCTACCTCTGCTGGTCCACTTGCCTTT
CGCAGACTCAGATAAGAAAAAAAGACGTCCGGCAGAGGATGAGGTGAGGG
GCGCTCTTGGGCCCACTTGACGAACACATCATTGCATGTGCCAGGGAAAG
CCAGTGTGCTCAATTCACCATGGCCCATTAAGCAAGCAATTTAAAAATGG
GAAATTATACTACACTAAGATGGAGCCACTTATATTCAGGTAAAGTAAAC
GTTTATTTTCTGAGCCCAGTGACCTTGAGTAAATGTCCCTGCTCCCACCC
CCAAGCCTGATACAACATGCTTCCCAAAAAAACTTTAAATGTCN
AACCGGCATCTTANGGATAATAAAAAACCCCCANAAAAACAATTTAATNN
CNNTTTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTTCCGAGAAATTCCTTCTTTATGTCCTCTACCA
TCATCATGAGATATGCTTTTTTTTTTCGGTCAACCTTTTCAGGTGTGTTA
GGGTGTCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGA
GTGGTCCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCT
GGCAATCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAGAGATTGTTC
CTCTGTTGATTTTGTTACCCTTTATTTTTAGGCGTGGGAGACAAGCTCTC
ATCTCTGAGTTTCAGTGGCTTCCCNAGCCCCCCCCCGCAAGCTCTCCTCT
CTCAGGGAAGGTGTACAGCTATCTGAAAGAAGAAAAACCTCCTGGGTGAA
GGTGAAGGTCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCA
GGAAGGTGGCCAGTTGTCTGGAGTCGAAGATGTCGACGCCTCAGAAGCTC
TGTGGATCTTGTCAGGAACGAGGCCGGCCGTCTGGAAATGAAGTTGGTGC
CACCTCATAAGCTCTGTGGTTCTTGTTAGAAAGGTGTCTGGGTGACTGGA
AATAAAGATGTAGCCGTCCCAAAATACTAGAAAATTTCCTCGCAGCCCCC
AGAAATGGCTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_j07.b1 MSMg01no320_j07.b1 CHROMAT_FILE:
MSMg01no320_j07.b1 PHD_FILE: MSMg01no320_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:07 2005
         (186 letters)



>mm_chr13_48287118_48287703
          Length = 586

 Score =  340 bits (176), Expect = 2e-98
 Identities = 182/184 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggaaggaacaagcctgaaatctaaccataaagctgatatttaaacaagactctcttaat 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tggaaggaacaagcctgaaatctaaccataaagctgacatttaaacaagactctcttaat 260

                                                                       
Query: 61  ggtccatcctttcctacttacagtcaaaactatgatttgcttgatcttgacttccagttt 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttcatcctttcctacttacagtcaaaactatgatttgcttgatcttgacttccagttt 320

                                                                       
Query: 121 ctccttaaggaaacagctttctacatctggttcaaataccacatttaggagaagagtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccttaaggaaacagctttctacatctggttcaaataccacatttaggagaagagtgag 380

               
Query: 181 gccc 184
           ||||
Sbjct: 381 gccc 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)