BAC Information

Click to search

BAC

Clone NameMSMg01-321F03
Chromosome13 (Build37)
Map Location 93,206,476 - 93,206,890
singlet/doubletsinglet
Overlap gene6430502M16Rik
Upstream geneRasgrf2, Msh3, Dhfr
Downstream gene4930405M20Rik, Zfyve16, LOC100039070, Spz1, Serinc5, Ppia-ps13_1124.1, Thbs4, EG624619, EG218444, Papd4, LOC100039163, Homer1, Jmy
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321F03.T7 (MSMg01no321_f03.b1)MSMg01-321F03.TJ (MSMg01no321_f03.g1)
ACCAG440320AG440321
length736739
length of high quality
(start - end)
419 (44 - 462)290 (73 - 362)
definitionCHROMAT_FILE: MSMg01no321_f03.b1 PHD_FILE: MSMg01no321_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:02 2005CHROMAT_FILE: MSMg01no321_f03.g1 PHD_FILE: MSMg01no321_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAAATACGCGGAAT
TCATCTCTTTGTCACGCTGACTGTCTTCCCCCTGTTGGCCTTCTGATCTC
TGTGTACTCTTTCCCTCTAGTAAGGGACTAGTCTGTTAATCACCTCTCCT
ACTTCAAACAGAAGATTTCCATCCCACAATCCTAGTCCTTTTTATTTCTT
TATTTTTGAGCCAGGGTCACACTTTCTAGCTCCCACCCTGGCTTTAAACA
TATTCTGTGGACCAGTCTGGCCTCGAACTCATGGTGATCTTCCTGCCTCC
ACACCTCAAATGCCAGGATTACCAGAGTGATCCAGCAGCTGGGAGTCATA
ATCTTCCACTTAAAAAGTCAGTGATCGGCCCGTTTACTGTGCTGTGCTGG
CATTGCATAGAAATGGACCCCCACCTTGGTGTATAAGTGTTCCTAGTTCT
CATTTGTACAATGCCAATGCATAGTATGAACTAGGGAGAGCGTCTTATGA
GGTCTTGGTTACAACAAATAATATAATATGCTCTAAATAACGAAAAGATC
CAGAGACTATGTGAAATACCATCGTCCTATATATTTTTCAGACTATATCC
TACCTGATATGCATAGCTTGTTTATTCCACCCCTTTTGATCTCTGTCCCC
TGCCGCCCCCCCCATGGATCGACCGACTTTTTTCTTATCTGATTATCCTG
TGTACGACCCACACTCCCTTTCTGTAACTTCTCCGT
ATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCCAAATACAGTGTGGGGCAGGGTGGGGGATTTTTTCT
GAGAACTGTTATTTTTGTTATCGCTATTTTTCTTGAGAATAGCTAACATT
GTTTTGGCAGCTGTAGACTTGGTCTGGTCATTTTGACTGCTAAAACTATA
GTTTGGAAAGTCCCTTCAAAGGGGAAGAGGCCGGGTGGTCTTGAATTTAT
TTTGGATTCTACAAGGGATGAACAAGGCACTGATCTGTGGGTATGGCAGT
CTGCCTTCAGGAGTTATTTTGTTGCTATGTTTATTTTAGCAGAACAGCAA
CTGTAGGTTTTCCTGTTTTTCTGTGACCCACCCAGCTGAAAGCTCTTGGC
CATTTTAACTAGGTCAGCCCCCCCGTCCCCTATAAAGGAATAGGCTTTAA
ATCTAACCAGACAGTGACTGGCTATCCCCATAACATTGTTACCACTAATA
CACTAGTATGCCTTACAGGTTGTAAGGCCACTAAGCTGAGAGACCTTGAT
GACTACCTTTCTCCTCTTGTAGCGTGATTAGTACTTCCCTGTGCTATCCC
TGCTGTCTTGCTTACCCTCCTTGGATGGACTGTATATCCTAGATTTGTAA
CTCAAATAAGCCCTTTCCTTCCTTACAATGCATTTAAGTCATCGCTTCCA
CAACGATATTTAATATATTTCCCAGCTTCTTTATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_f03.b1 MSMg01no321_f03.b1 CHROMAT_FILE:
MSMg01no321_f03.b1 PHD_FILE: MSMg01no321_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:02 2005
         (419 letters)



>mm_chr13_93206273_93207090
          Length = 818

 Score =  727 bits (376), Expect = 0.0
 Identities = 406/416 (97%), Gaps = 1/416 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcatctctttgtcacgctgactgtcttccccctgttggccttctgatctctgtgta 63
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcatctctttg-catgctgactgtcttccccctgttggccttctgatctctgtgta 262

                                                                       
Query: 64  ctctttccctctagtaagggactagtctgttaatcacctctcctacttcaaacagaagat 123
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 263 ctctttccctctagtaagggactagtctgttaatcacctctcccacttcaaacagaagat 322

                                                                       
Query: 124 ttccatcccacaatcctagtcctttttatttctttatttttgagccagggtcacactttc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttccatcccacaatcctagtcctttttatttctttatttttgagccagggtcacactttc 382

                                                                       
Query: 184 tagctcccaccctggctttaaacatattctgtggaccagtctggcctcgaactcatggtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tagctcccaccctggctttaaacatattctgtggaccagtctggcctcgaactcatggtg 442

                                                                       
Query: 244 atcttcctgcctccacacctcaaatgccaggattaccagagtgatccagcagctgggagt 303
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 443 atcttcctgcctccacacctcaaatgccaggattaccagagagatccagcagctgggagt 502

                                                                       
Query: 304 cataatcttccacttaaaaagtcagtgatcggcccgtttactgtgctgtgctggcattgc 363
           |||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 503 cataatcttccatttaaaaagtcagtgattggcccgtttactgagctgtgctggcattgc 562

                                                                   
Query: 364 atagaaatggacccccaccttggtgtataagtgttcctagttctcatttgtacaat 419
           ||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 563 atagaaatggacagccaccttggtgtagaagtgttcctagttctcatttgtacaat 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 818
Length adjustment: 9
Effective length of query: 410
Effective length of database: 809
Effective search space:   331690
Effective search space used:   331690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)