Query= MSMg01no321_m24.b1 MSMg01no321_m24.b1 CHROMAT_FILE:
MSMg01no321_m24.b1 PHD_FILE: MSMg01no321_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:38 2005
(689 letters)
>mm_chr13_83550440_83551528
Length = 1089
Score = 1168 bits (604), Expect = 0.0
Identities = 669/692 (96%), Gaps = 6/692 (0%)
Strand = Plus / Plus
Query: 1 gaaggctgttcataagtacaaatccctcctgcaataatgttgtctaggaactcattttga 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 gaaggccgttcataagtacaaatccctcctgcaataatgttgtctaggaact-attttga 259
Query: 61 acaacatattttttttcgctacacaatttacttggtgatctaaaacttatagtacttgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acaacatattttttttcgctacacaatttacttggtgatctaaaacttatagtacttgca 319
Query: 121 gtgaaaaaatgtgtctaaaattattgggaagttttaaatgcagattgtattcatttcaat 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 320 gtgaaaaaatgtgtctaaaattattggaaagttttaaatgcagattgtattcatttcaat 379
Query: 181 ggtaatatatcagagtatataagtcatgttcttctattcagttgcacctttcactagaaa 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggtaatatgtcagagtatataagtcatgttcttctattcagttgcacctttcactagaaa 439
Query: 241 caaaatacagaattctgtaagtgttgtggttctaattattcactaatactgagaattacc 300
|||||||||||| || ||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 440 caaaatacagaagtcagtaagtgttgtggttctaattatacactaatactgagaaaaacc 499
Query: 301 tccaagaacgttgtcactcagtaaatatctgtgatatgaatggatagccgcttgctatct 360
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 500 tccaagaacgttgtcactcagtaaatatctgtgatatgaatggataggtgcttgctatct 559
Query: 361 gcatctgaccaagctgcatctctttaccttcctgtattcttatacctcaacattcataca 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 560 gcatctgaccaagctgcatctctttaccttcctgtattcttataccccaacattcataca 619
Query: 421 tggtgactatcagtataaattcctatatctaaggccaatgcagctatttttgtacaccat 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 620 tggtgactatcagtataaattcctatatctaaggccaatgcagctacttttgtacaccat 679
Query: 481 accatcctttctcaactacatgctataagactcatatctagtctactcttctaatgccca 540
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 680 accaacctttctcaactacatgctataagactcatatctagtctactcttctaatgtcca 739
Query: 541 tatcatctattatacatac--aaataagttccatagcaatacaataatgttttaatatca 598
|| ||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 740 taccatctattata--tactcaaataagttccatagcaatacaataatgttttaatacca 797
Query: 599 ttgtaaaaaa-gaagtcttcctattcctcaagtttatctccacttctctagtttctttta 657
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ttgtaaaaaaagaagtcttcctattcctcaagtttatctccacttctctagtttctttta 857
Query: 658 ttgaaaaaaatcataaaatgttatcattttgc 689
||||||||||||||||||||||||| ||||||
Sbjct: 858 ttgaaaaaaatcataaaatgttatctttttgc 889
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no321_m24.g1 MSMg01no321_m24.g1 CHROMAT_FILE:
MSMg01no321_m24.g1 PHD_FILE: MSMg01no321_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:38 2005
(686 letters)
>mm_chr13_83721280_83722365
Length = 1086
Score = 775 bits (401), Expect = 0.0
Identities = 406/408 (99%)
Strand = Plus / Minus
Query: 279 ctttcttttttatcacactaatacaatttattttaaaatatacaattcattattgacatt 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 ctttcttttttatcacactaatacaatttattttaaaatatacaattcattattgacatt 1027
Query: 339 tttcaagccaacaaaataacttataatagttaaatgcctcttaaatgtacgtgatacctt 398
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 tttcaagtcaacaaaataacttataatagttaaatgcctcttaaatgtacgtgatacctt 967
Query: 399 ctgaaactaaaagtaatatgcactcaaccaattttaaaaatctatttgggatattaaaca 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 ctgaaactaaaagtaatatgcactcaaccaattttaaaaatctatttgggatattaaaca 907
Query: 459 tgatagaagtagaagaaaatagctcacttctcttgtaagtacagtctctaccgtggttac 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 tgatagaagtagaagaaaatagctcacttctcttgtaagtacagtctctaccgtggttac 847
Query: 519 aggctgctcctctgcaccttcatctactaaatatactaatttcatgtggagaagataaaa 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 aggctgctcctctgcaccttcatctactaaatatactaatttcatgtggagaagataaaa 787
Query: 579 caaattagtatctggaagtccaaagcatgtttactagntcaacatggtcaaaatatacct 638
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 786 caaattagtatctggaagtccaaagcatgtttactagttcaacatggtcaaaatatacct 727
Query: 639 aagttaaaggtcaaagaatcctacattccctgctgagctaactcagga 686
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 aagttaaaggtcaaagaatcctacattccctgctgagctaactcagga 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
