Query= MSMg01no324_a04.b1 MSMg01no324_a04.b1 CHROMAT_FILE:
MSMg01no324_a04.b1 PHD_FILE: MSMg01no324_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:13 2005
(698 letters)
>mm_chr13_83259109_83260206
Length = 1098
Score = 1319 bits (682), Expect = 0.0
Identities = 691/694 (99%)
Strand = Plus / Minus
Query: 5 gaattcagtgtgattactagcacatacaaaatcatccttttctggccaaaaggttttaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 gaattcagtgtgattactagcacatacaaaatcatccttttctggccaaaaggttttaga 839
Query: 65 ttgcaaataatcaaacaatggaagaaaagcttatgtttgtgccgtatgcactggttctcg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 ttgcaaataatcaaacaatggaagaaaagcttatgtttgtgccgtatgcactggttctcg 779
Query: 125 atttttgttacgtgtgtgcctaaagtaacttaaaactacccgagaccattagccataaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 atttttgttacgtgtgtgcctaaagtaacttaaaactacccgagaccattagccataaac 719
Query: 185 tttcctgagaataattcatgttcagaaaagacagagagttttgtcttataatcagtgtgg 244
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tctcctgagaataattcatgttcagaaaagacagagagttttgtcttataatcagtgtgg 659
Query: 245 ctttctctatgatctgttctttctttcatgttcaagcaaaagaaaatataagtaccgtgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ctttctctatgatctgttctttctttcatgttcaagcaaaagaaaatataagtaccgtgg 599
Query: 305 aaaggcccttttgtgtaacgcgtggagccctgaaagggactttacgatgatgtggttatc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aaaggcccttttgtgtaacgcgtggagccctgaaagggactttacgatgatgtggttatc 539
Query: 365 acgacaccagcaagagtcctgagtcttgtgcacatattatcaatctgggaatcttgttac 424
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 atgacaccagcaagagtcctgagtcttgtgcacatattatcaatctgggaatcttgttac 479
Query: 425 cctagttaccccagaatgtttccttctgactgcattctttctatctgtaagtaactcttt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cctagttaccccagaatgtttccttctgactgcattctttctatctgtaagtaactcttt 419
Query: 485 tactcaacagggaacaaggggccagatggcaagcagacatgtgcttaaggctgggtgagt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tactcaacagggaacaaggggccagatggcaagcagacatgtgcttaaggctgggtgagt 359
Query: 545 ctcatttgttctctatttcttgatactttccgtcactccataactaaccacacataaggg 604
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 358 ctcatttgttctctatttcttgatactttctgtcactccataactaaccacacataaggg 299
Query: 605 atgcaccctgtgggctgctgtttgctttttatctgacatatgattataccaatgtgtatt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 atgcaccctgtgggctgctgtttgctttttatctgacatatgattataccaatgtgtatt 239
Query: 665 tgttaaaattattgttattatgagtttctctttt 698
||||||||||||||||||||||||||||||||||
Sbjct: 238 tgttaaaattattgttattatgagtttctctttt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space: 748544
Effective search space used: 748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_a04.g1 MSMg01no324_a04.g1 CHROMAT_FILE:
MSMg01no324_a04.g1 PHD_FILE: MSMg01no324_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:13 2005
(546 letters)
>mm_chr13_83248113_83249059
Length = 947
Score = 984 bits (509), Expect = 0.0
Identities = 544/571 (95%), Gaps = 25/571 (4%)
Strand = Plus / Plus
Query: 1 aagatagagtctacaaatgagagagatggcaatatgcctggagtaagcactatcaagcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 aagatagagtctacaaatgagagagatggcaatatgcctggagtaagcactatcaagcaa 236
Query: 61 caaagagatcctgtctcagaaaagctgaaaggtgaagacttacccataatattggactct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 caaagagatcctgtctcagaaaagctgaaaggtgaagacttacccataatattggactct 296
Query: 121 gtcctccattcatgttctgtggaactcacataaccacactcatgcacacattcaggaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gtcctccattcatgttctgtggaactcacataaccacactcatgcacacattcaggaaca 356
Query: 181 catgtatcactcacacacacacacacacacacacacacacacacacacacacac------ 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 catgtatcactcacacacacacacacacacacacacacacacacacacacacacacacac 416
Query: 235 ------------------ttttgcagaaaaaaagaaaagaatcagcaaaatgaacacaaa 276
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 atacacacacacacacacttttgcagaaaaaaagaaaagaatcagcaaaatgaacacaaa 476
Query: 277 agaatggggaaaacaatctcgccaggtagttaatacctaagatatataaacaactgaaga 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 agaatggggaaaacaatctcgccaggtagttaatacctaagatatataaacaactgaaga 536
Query: 337 aagaaacaaatccataaataaatattattcaaaaa-tagtaattggtcaaatgaattgaa 395
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 537 aagaaacaaatccataaataaatattattcaaaaaatagtaattggtcaaatgaattgaa 596
Query: 396 gagacatttctcaatagaaaaagttcaaccttcttagctatcagagaaataaaaattaaa 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gagacatttctcaatagaaaaagttcaaccttcttagctatcagagaaataaaaattaaa 656
Query: 456 actactgtaaggttcctcctcagtccagtaagaatagtccatgtatgtgtgtgtgtgtgt 515
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 657 actactgtaaggttcctcctcagtccagtaagaatagtccgtgtatgtgtgtgtgtgtgt 716
Query: 516 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 546
||||||||||||||||||||||||||||||
Sbjct: 717 ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 747
Score = 97.4 bits (50), Expect = 2e-24
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 497 tgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 546
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 372
Score = 91.6 bits (47), Expect = 1e-22
Identities = 50/51 (98%)
Strand = Plus / Minus
Query: 496 atgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 546
|||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 368
Score = 87.7 bits (45), Expect = 2e-21
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 190 ctcacacacacacacacacacacacacacacacacacacacacac 234
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ctcacacacacacacacacacacacacacacacacacacacacac 719
Score = 81.9 bits (42), Expect = 1e-19
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 501 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 546
||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 378
Score = 81.9 bits (42), Expect = 1e-19
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 501 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 546
||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 380
Score = 81.9 bits (42), Expect = 1e-19
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 501 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 546
||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 427 tgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 382
Score = 81.9 bits (42), Expect = 1e-19
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 501 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 546
||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 429 tgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 384
Score = 81.9 bits (42), Expect = 1e-19
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 501 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 546
||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 431 tgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 386
Score = 81.9 bits (42), Expect = 1e-19
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 501 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 546
||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 433 tgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 388
Score = 81.9 bits (42), Expect = 1e-19
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 192 cacacacacacacacacacacacacacacacacacacacaca 233
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 cacacacacacacacacacacacacacacacacacacacaca 718
Score = 80.0 bits (41), Expect = 4e-19
Identities = 44/45 (97%)
Strand = Plus / Minus
Query: 502 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 546
|||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 434 gtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtg 390
Score = 80.0 bits (41), Expect = 4e-19
Identities = 44/45 (97%)
Strand = Plus / Minus
Query: 187 tcactcacacacacacacacacacacacacacacacacacacaca 231
|||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tcacacacacacacacacacacacacacacacacacacacacaca 718
Score = 76.1 bits (39), Expect = 6e-18
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 192 cacacacacacacacacacacacacacacacacacacacacac 234
|||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 745 cacacacacacacacacacacacacacaaacacacacacacac 703
Score = 76.1 bits (39), Expect = 6e-18
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 192 cacacacacacacacacacacacacacacacacacacacacac 234
|||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 747 cacacacacacacacacacacacacacacaaacacacacacac 705
Score = 76.1 bits (39), Expect = 6e-18
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 192 cacacacacacacacacacacacacacacacacacacacacac 234
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 749 cacacacacacacacacacacacacacacacaaacacacacac 707
Score = 76.1 bits (39), Expect = 6e-18
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 192 cacacacacacacacacacacacacacacacacacacacacac 234
|||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 751 cacacacacacacacacacacacacacacacacaaacacacac 709
Score = 76.1 bits (39), Expect = 6e-18
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 192 cacacacacacacacacacacacacacacacacacacacacac 234
|||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 753 cacacacacacacacacacacacacacacacacacaaacacac 711
Score = 76.1 bits (39), Expect = 6e-18
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 192 cacacacacacacacacacacacacacacacacacacacacac 234
|||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 755 cacacacacacacacacacacacacacacacacacacaaacac 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 172
Number of extensions: 76
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 24
Length of query: 546
Length of database: 947
Length adjustment: 10
Effective length of query: 536
Effective length of database: 937
Effective search space: 502232
Effective search space used: 502232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
