BAC Information

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BAC

Clone NameMSMg01-324L04
Chromosome13 (Build37)
Map Location 86,109,300 - 86,109,798
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1, LOC435373, LOC675662
Downstream geneCox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324L04.T7 (MSMg01no324_l04.b1)MSMg01-324L04.TJ (MSMg01no324_l04.g1)
ACCAG442778AG442779
length717732
length of high quality
(start - end)
503 (45 - 547)443 (82 - 524)
definitionCHROMAT_FILE: MSMg01no324_l04.b1 PHD_FILE: MSMg01no324_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:04 2005CHROMAT_FILE: MSMg01no324_l04.g1 PHD_FILE: MSMg01no324_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGA
ATTCTTTAACACGTGCCGCTAGCCTCTGCAAAGACTATCCTCCAGGGTCC
ATTCTATAAATTGAGAAAATTTTCATATTTAACCTACCCTTTAAAAGCCA
AGACTTAAAAAGCAATTGGAATTTTTTAATGGCTGTCTTTCTTAGAGGTT
TCTAAAATTATTCTTCACAGCATATCTAAAATACAAATAACGTTACCTCC
TAAATCTTGTTTTAATATTGTACTAGGTCTTATGGTGTCCAAAATAACCC
CATTTCTGAAAGCAGGATAATTACCAAAGTCTTGATTGGTAATTACATTT
TTGTAAACAAGAGTACATCTAGGTAGTACCTCTAGAGTCAGAGCTGCCTA
ATTAGAATTCTAGTAAACCTTTCCATACTTCTCTCTAAATATCATCCATA
TCTTACACTGCATATGTTAAAGCATTTTAATCAATATTATATATATATGC
ACACACAGAACAAATTTGACAGAAATCATGTCTGTCTTTTCTTTATAAAT
TATGTTTCTATTTTTGTTAAAATATTTATCAATTAAAAATATGCATTATA
CAGATATATATTATTATTATTTAATACTGCTATACCATCTAATAAGGGGA
TTTTTAGAAAACATTTTTATGAATATTCCCTACTTCACTTTTTAAATTTA
AATAACTTTTATAAGTT
AAAAAAGACGATGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGCCCAATTCCTAACTATATTGTAT
ATAAACCCAGTGTTTTCTGGACTCAGGGTCACTTGCTAGCATTCACTCTG
TGAATGTGAGGCATGTGATCTGAGTTCAAACTTGGAACAATAAAACTCGC
TCTTTTGAGAGTTGCAGCAAACTGCACAATTCCTGGGCTCATCTGGGTTT
CCCATGGACTCAGAGCACAACACATCCAATCGCAAAACACCCAGAGGAAG
CTGGACTCCCAGGAGCTCTAGCACACCCAGGATCATAGGTGAGGAGGTCA
CAACATCTGCCCCAACACCAGGAATAACTGGTACCCTTGTGGATCTAGAG
ACACAGGAACCCTCGCCTGACAAGTGGCATGGTTTCCTTTCAGTCTGAAC
CAGTGCCCTGGGCAGACATTGGCTACTAGCTATGAACCAAATCTCAGAAT
ACCCAGAGGAAGTTTGATTCCCAGGTGCTCCATCAAGACCAGGATCATAG
GATCTTACGAGCTTGGTCACAATAGGATATCAGGATGACAGAGGCAGCGT
GAATCCCAGGAGATCTTAGTTCCAGGATCTCAGGATCACAGGATCACAGA
AATGGCTGGACTCTGATGAGTTCTGACTGAACCATGATAACTAGAGGGAC
AGGCTTCCAATCGGAGACCGTGAGTAAAGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_l04.b1 MSMg01no324_l04.b1 CHROMAT_FILE:
MSMg01no324_l04.b1 PHD_FILE: MSMg01no324_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:04 2005
         (503 letters)



>mm_chr13_86109097_86109998
          Length = 902

 Score =  866 bits (448), Expect = 0.0
 Identities = 487/500 (97%), Gaps = 1/500 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttaacacgtgccgctagcctctgcaaagactatcctccagggtccattctat 63
           |||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaa-tctttaacacgtggagctagcctctgcaaagactatcctccagggtccattctat 262

                                                                       
Query: 64  aaattgagaaaattttcatatttaacctaccctttaaaagccaagacttaaaaagcaatt 123
            || |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 263 taagtgagaaaattttgatatttaacctaccctttaaaaaccaagacttaaaaagcaatt 322

                                                                       
Query: 124 ggaattttttaatggctgtctttcttagaggtttctaaaattattcttcacagcatatct 183
           ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 323 ggaattttttaatggctgtatttcttagaggtttctaaaattattcttcacaacatatct 382

                                                                       
Query: 184 aaaatacaaataacgttacctcctaaatcttgttttaatattgtactaggtcttatggtg 243
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 383 aaaatacaaataacgttacctcctaaatcctgttttaatattgtactaggtcttatggtg 442

                                                                       
Query: 244 tccaaaataaccccatttctgaaagcaggataattaccaaagtcttgattggtaattaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tccaaaataaccccatttctgaaagcaggataattaccaaagtcttgattggtaattaca 502

                                                                       
Query: 304 tttttgtaaacaagagtacatctaggtagtacctctagagtcagagctgcctaattagaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 503 tttttgtaaacaagagtacatctaggtagtacctctagagtcagagctgcctaattaaaa 562

                                                                       
Query: 364 ttctagtaaacctttccatacttctctctaaatatcatccatatcttacactgcatatgt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttctagtaaacctttccatacttctctctaaatatcatccatatcttacactgcatatgt 622

                                                                       
Query: 424 taaagcattttaatcaatattatatatatatgcacacacagaacaaatttgacagaaatc 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 623 taaagcattttaatcaatattatatatatatgcacacacagaacaaatttgaaagaaatc 682

                               
Query: 484 atgtctgtcttttctttata 503
           |||| |||||||||||||||
Sbjct: 683 atgtttgtcttttctttata 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 902
Length adjustment: 10
Effective length of query: 493
Effective length of database: 892
Effective search space:   439756
Effective search space used:   439756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)