BAC Information

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BAC

Clone NameMSMg01-325D23
Chromosome13 (Build37)
Map Location 13,870,890 - 13,871,422
singlet/doubletsinglet
Overlap genenone
Upstream genePrl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst
Downstream geneLOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1, Mrpl32, Psma2, AW209491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325D23.T7 (MSMg01no325_d23.b1)MSMg01-325D23.TJ (MSMg01no325_d23.g1)
ACCAG443184AG443185
length760775
length of high quality
(start - end)		688 (70 - 757)89 (67 - 155)
definitionCHROMAT_FILE: MSMg01no325_d23.b1 PHD_FILE: MSMg01no325_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:44 2005CHROMAT_FILE: MSMg01no325_d23.g1 PHD_FILE: MSMg01no325_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGGA
ATTCCTGTGGCCATCTCATGAATCCAGCAGTCTTGGGGTGCCTGAGGGCA
GATGGCCTGTACTTTAGTAAGGGCATCTGCTTCTTGGCTTCTGGGAAGAC
TCAATGGACTGTGGATTCTTAAACAGAGCACTACTGACTCTGATCTCTGC
TGAATTCTGTGTTTCTTCCCACATCTGCTGTCCTGACTAAGCTGTCCACA
AAGCCCAACTGTAGGTGCAGACTGTCATAGGCCCTGTCTCATGAGCTATT
ACTATTCATGGTGCTCTTAATCTAATCCACTGGCTATTGTTTCCTTCTCT
CTAGCCACATGGTATCTGTGCTTATCTGCATGGCTGCAGCCATACAGTCT
CATCTTGAGTCCTGACTTGTACCAGCAGTGAACTATGGCTTGTTGTTGTT
CCATTCCTTGAGAAGAACATTGGTCCTAGCACAACCAGTGATTAGTAACA
GGACTTCCAGATACACCTTGTTCTGCAACAGCCATGGACTGAGATCTCGT
CATCATTCACAAGTCATTTATACAGGTTTAAGTCTATTTTTAGCAAGTTT
ATTTCCAAACTGAAGTGGCAGTGTGTAAAAGGTAACAGCATGTGATGACT
TCCAGGAATGTGTGCTATAACATGCATGTTACAGAGCGTTTCCAACATAT
ACATATTAGGTCTCATGCTCAATAAATAATCCCCCCCATGGATTTTTTAA
ATTTTTACAT

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGAGTATTTTTTATAGTCTGCTGCTATATTCAA
CTTGAACACCTTTCTCTGATTTTTTAAAATTATTTTTAGATGCCTGTTAA
AAAATTTTAAGTCCCAAAANTATTATCAATGTGTGGTTTTTCTTGCCTAT
TTGTGAATTTACATTGTAATGGACCTGAATTTTTGAAATGATGTTTCTTA
GCAAAAANNNNATATTTTAATCCTTTTGTTTTATAAAAAATGATTTGAAT
AAATTTTCCTTTTTCTAAGGGTTATTTTTTAAAATCCCCCAATATTAATT
ATTAGGCCAATTATATTTTTATCTGAAAATATTGGTTGAAACATCTCTGT
ANTCCCAAACTACTTGGNAAGCTGAAGCCGGGAGGACATCATGTTAANNN
AACCACCCTGAAATTTTTACCAAATTAATGGGAACCCCCTCAAGATGTNC
GAAAACAGGAGNTGTTTTNNNNTGTGGNNNNNTTGAATGTNNNNACAGCT
GTGAATAAATGTCATATACGGCTTTTNNNNNNNNCCGCCCCTCTGTTTGG
NNNNNNNTNNCCNCCNNNNNTTTTNCCCCTACCCGAAAGAAATAAGATTT
TTNTTNNNTNTTANNNCTCTTTNNNTTNNAAANAAAATTTTTAAAATTTC
GGAAGGGGCCGCATATGTTTTGTTAAGANTNCNCCCCCCCCCCCCCTANN
NNNNNNNNTTTGAATATACTACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_d23.b1 MSMg01no325_d23.b1 CHROMAT_FILE:
MSMg01no325_d23.b1 PHD_FILE: MSMg01no325_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:44 2005
         (688 letters)



>mm_chr13_13870335_13871422
          Length = 1088

 Score =  994 bits (514), Expect = 0.0
 Identities = 529/534 (99%), Gaps = 1/534 (0%)
 Strand = Plus / Minus

                                                                        
Query: 155  tctgctgtcctgactaagctgtccacaaagcccaactgtaggtgcagactgtcataggcc 214
            ||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||
Sbjct: 1088 tctgctgtcctgactaagctgt-gataaagcccaactgtaggtgcagactgtcataggcc 1030

                                                                        
Query: 215  ctgtctcatgagctattactattcatggtgctcttaatctaatccactggctattgtttc 274
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1029 ctgtctcatgagctattactattcatggtgctcttaatctaatccattggctattgtttc 970

                                                                        
Query: 275  cttctctctagccacatggtatctgtgcttatctgcatggctgcagccatacagtctcat 334
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969  cttctctctagccacatggtatctgtgcttatctgcatggctgcagccatacagtctcat 910

                                                                        
Query: 335  cttgagtcctgacttgtaccagcagtgaactatggcttgttgttgttccattccttgaga 394
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909  cttgagtcctgacttgtaccagcagtgaactatggcttgttgttgttccattccttgaga 850

                                                                        
Query: 395  agaacattggtcctagcacaaccagtgattagtaacaggacttccagatacaccttgttc 454
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849  agaacattggtcctagcacaaccagtgattagtaacaggacttccagatacaccttgttc 790

                                                                        
Query: 455  tgcaacagccatggactgagatctcgtcatcattcacaagtcatttatacaggtttaagt 514
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789  tgcaacagccatggactgagatctcgtcatcattcacaagtcatttatacaggtttaagt 730

                                                                        
Query: 515  ctatttttagcaagtttatttccaaactgaagtggcagtgtgtaaaaggtaacagcatgt 574
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729  ctatttttagcaagtttatttccaaactgaagtggcagtgtgtaaaaggtaacagcatgt 670

                                                                        
Query: 575  gatgacttccaggaatgtgtgctataacatgcatgttacagagcgtttccaacatataca 634
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669  gatgacttccaggaatgtgtgctataacatgcatgttacagagcgtttccaacatataca 610

                                                                  
Query: 635  tattaggtctcatgctcaataaataatcccccccatggattttttaaattttta 688
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 609  tattaggtctcatgctcaataaataatcccccccatggaatttttaaattttta 556


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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