BAC Information

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BAC

Clone NameMSMg01-325M03
Chromosome13 (Build37)
Map Location 68,711,224 - 68,711,778
singlet/doubletsinglet
Overlap geneMtrr
Upstream geneA530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223
Downstream geneLOC100042233, Fastkd3, 1700001L19Rik, Adcy2, LOC666205, LOC218332, Pols, A530095I07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325M03.T7 (MSMg01no325_m03.b1)MSMg01-325M03.TJ (MSMg01no325_m03.g1)
ACCAG443563AG443564
length721719
length of high quality
(start - end)
559 (46 - 604)616 (73 - 688)
definitionCHROMAT_FILE: MSMg01no325_m03.b1 PHD_FILE: MSMg01no325_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:19 2005CHROMAT_FILE: MSMg01no325_m03.g1 PHD_FILE: MSMg01no325_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTTCTTATCCCAGGCCTGCTCACCAGTAGCCTTGGCTGGATAGT
TGTAAGCCTAGGGCTCCATCTGTCTCAGCAACTTCTTAATGTGGTTCTGA
GAGTTGAACACTGGTCTTTGTGGATGCACTTTACTGACCAACCCACCTTC
CCAGCTTGGAAATTGTGTTTCATTATATTTTATCCCATTTGTTTCTCAAG
GAGGAAAACCAAGCATCTGTGCCTTCAGGGGATCCAAGTTTTCAAGTTCC
AATTTCAAAAGCCATTCGGCTGACTACAAATGATGCCGTAAAGAGCACTC
TGCTGTTGGAACTGGACATTTCAGTAAGTTGTTGCTGAGTTTACTCTCAG
CACGGTTGCCCTTTCGGCGCTCGCACACCCAGGAGGCGAGACGTCTCTGG
CAAGACGCCTGGCCACTTTGTTCCTGTCTATCATTTCCTCCTCGCCTCGT
TCCTCTTGAGTGCAGACGCGAGGCGTGGGTGCAGGGACAGTGCAGAATGT
CGCACTGTCGCCGTGGTCATGAGCCATGAGAGACTGATGGAGTCCAGACC
GCATTCACCGGTGTCAGGCCCACAGAAGGAAGCTGTCCACTTAAGGTCAG
TCAGCGAGGCATACAGTTGAGGCTAGACCGCCAGGAAATGCTAACTTCTC
CGGGTAGGTGTTCTGATTATN
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTAGATACCGCTGGCTTCTACAGACTCT
AGATACCTGGGTTGGCGACCTTAGCTGCCCCGTTGTACCCCCTAACCAAG
GAAGGGGGAGTGTTTTTGTGGACCCCAAATCACCAGAAAGCCTTTAAAGA
AATTAAAAAAAAACCCTACTGATGGCCAGCCTTTGTCTGACCTAACTAAG
CCGTTTACTCTTTATGTGGAAGAGAGATCAGGGGCTGCCAGAGGAGTCCT
TACTCAGACTTTGGGACTTTAAAAAGGCCAGTGGCTTACCTATGCAAGAA
GTTACACCTTGTTGCCAACGGGTGGTTTTCTTGCCTGAGAGCTATTGCTG
CCCTAACTCTGCTTGCCACCCATGCTGATAAGCTCACTCTGGAACAGCAA
ATGGCTGTAGTGGCATCCCAGACTCTTGAAAGCAGTACCCAAAAGCCCTC
TGACTGATAGATGATGACCAACGCTCCAGGGACACATTACCAGAGCTTTT
TTGTTGACTAAATGAGTGACCGAGTGACCTTCGCTCCCCTGCTGTCCTCA
AGCGACCCTACTGCTCGAGACTTCACCTACGTATCACTGTGCTGACATTC
TGGCAGAAGAAACTGGTACTCGAAATGATCTGAAGGATAAGATCAGCCTT
GGCCTGAGAGTTCAAGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_m03.b1 MSMg01no325_m03.b1 CHROMAT_FILE:
MSMg01no325_m03.b1 PHD_FILE: MSMg01no325_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:19 2005
         (559 letters)



>mm_chr13_68710864_68711822
          Length = 959

 Score = 1038 bits (537), Expect = 0.0
 Identities = 551/557 (98%), Gaps = 4/557 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccttctt--atcccaggcctgctcaccagtagccttggctggatagttgtaagc 62
           |||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 gaattcccttcttacat--caggcctgctcaccagtagccttggctggatagttgtaagc 858

                                                                       
Query: 63  ctagggctccatctgtctcagcaacttcttaatgtggttctgagagttgaacactggtct 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 ctagggctccatctgtctcagcaacttcttaatgtggttctgagagttgaacactggtct 798

                                                                       
Query: 123 ttgtggatgcactttactgaccaacccaccttcccagcttggaaattgtgtttcattata 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ttgtggatgcactttactgaccaacccaccttcccagcttggaaattgtgtttcattata 738

                                                                       
Query: 183 ttttatcccatttgtttctcaaggaggaaaaccaagcatctgtgccttcaggggatccaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttttatcccatttgtttctcaaggaggaaaaccaagcatctgtgccttcaggggatccaa 678

                                                                       
Query: 243 gttttcaagttccaatttcaaaagccattcggctgactacaaatgatgccgtaaagagca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gttttcaagttccaatttcaaaagccattcggctgactacaaatgatgccgtaaagagca 618

                                                                       
Query: 303 ctctgctgttggaactggacatttcagtaagttgttgctgagtttactctcagcacggtt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ctctgctgttggaactggacatttcagtaagttgttgctgagtttactctcagcacggtt 558

                                                                       
Query: 363 gccctttcggcgctcgcacacccaggaggcgagacgtctctggcaagacgcctggccact 422
           |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gccctttcggtgcttgcacacccaggaggcgagacgtctctggcaagacgcctggccact 498

                                                                       
Query: 423 ttgttcctgtctatcatttcctcctcgcctcgttcctcttgagtgcagacgcgaggcgtg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttgttcctgtctatcatttcctcctcgcctcgttcctcttgagtgcagacgcgaggcgtg 438

                                                                       
Query: 483 ggtgcagggacagtgcagaatgtcgcactgtcgccgtggtcatgagccatgagagactga 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ggtgcagggacagtgcagaatgtcgcactgtcgccgtggtcatgagccatgagagactga 378

                            
Query: 543 tggagtccagaccgcat 559
           |||||||||||||||||
Sbjct: 377 tggagtccagaccgcat 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)