BAC Information

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BAC

Clone NameMSMg01-325N23
Chromosome13 (Build37)
Map Location 44,985,060 - 44,985,404
singlet/doubletsinglet
Overlap geneJarid2
Upstream geneLOC100039432, A730030A06, EG637868, EG667157
Downstream geneDtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr, Atxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325N23.T7 (MSMg01no325_n23.b1)MSMg01-325N23.TJ (MSMg01no325_n23.g1)
ACCAG443646AG443647
length770757
length of high quality
(start - end)
369 (47 - 415)345 (70 - 414)
definitionCHROMAT_FILE: MSMg01no325_n23.b1 PHD_FILE: MSMg01no325_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:27 2005CHROMAT_FILE: MSMg01no325_n23.g1 PHD_FILE: MSMg01no325_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGAAGATGCGCGGA
ATTCCAAGCCCAATGCCTTGCTAAGGACGAACTAGGACTGTTGGAACACT
GGCGGACGGCTTTAGCTATGTCAGGATTCAATCTTAAAAGGCACTTATGA
TAGGAAAATATTGAAAGAGAGCACGTGGATCCATACACTAGACTAACGCG
GGAATGGAATGTGGGAATGAAAAATCGCTGTATGGGTAGGAAACGCTAGA
CTCCAGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCATGAGTGACTTTT
AAGCCTCTCGGCTTGTCCAGTTGACTCGACCAGAGAGCGTAGCAGTAAAT
GACATGTAACTCCTTATTATCAAACAGAGCCACTGAACTGCGTTAAAAAT
CCTCCTTCGCCCTAGNCTGGCTCCCTTNCCCCTTTCNCCCCGGGGCCTCC
TCTTGGCTCCTGGAACCATCGGCTCCACGGATTTTTGTTGCTATTTGTTT
GTTTGACTTTTCCAGAATACCACATTGTAGACTAACCCTTTCTGCGTCAT
GCCATTCCTAAAGTAATATTCACTTAAGGTCTCCATGCCCCATCATGGTG
TGACAGCTCACTGCTCAGTGGAAGATCATGTGCTGTCCTAGGGATGTGCC
TTCATTTATTGGTCCATTTACCTGATTGCAGCATCAGGGTCACTTCCAAC
TTTAAACAAGTGTAAATATAGCTTCTCCAGACATACTGGTGCCGGGAGAC
ACTTTCCACTTATTTAAGAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTATCATTACCTCGGTCATGTTTTCTTTCCC
TTTCAGAACACATTATCTTTTGAATGAAGAGTTTTATAAAATCTCAAACT
GCAGAATCACTATTTGTCTACTCCTTGCAAGTTAATGCTCCACCCCTTTT
GTGAATAAAGCATGAGTCTTGCCCTGCTTTCTTGAGGGAAGTGCAAGAAT
CTTTTTGCACAGGTGTTCCTATGCATGGTCCCTTTGGTATTTTGATGAAG
GCAGATACTTAAAAATAGCAATAGTTGAGCCGGCTCTGGTGGCGAATGCC
TTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTAGAG
GCCAGCCTGGTCTACAAAGTNGAGTTCCAGAAGAAAACCTTGGTCCTCNN
NNACCCNNNTAAAATAAAAAAGAAAAAAAAAGCAATAGCTGTCCAGGCTA
GGGCTCCTCATGTTATCAAGAGGACCAGGAAACTATTTCTCAAAGACAAA
CCAGTCAGTTTGATTTATGGTGTTCTGTTTTTCTGACTATTATTACAAAG
TTATTAAGAACCATTAAAACTTAATATCATGAGTTACTTGTAACATTGTT
AGCAAATATATTTAAATAGCTAATATATATATCTACATATAGCTCTATAG
TTATTTTATACCATTGCCCATAATATATTCCAGTGGAAACTAGATGGTGA
TGTTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_n23.g1 MSMg01no325_n23.g1 CHROMAT_FILE:
MSMg01no325_n23.g1 PHD_FILE: MSMg01no325_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:28 2005
         (345 letters)



>mm_chr13_44984860_44985604
          Length = 745

 Score =  659 bits (341), Expect = 0.0
 Identities = 344/345 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatcattacctcggtcatgttttctttccctttcagaacacattatcttttgaatgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatcattacctcggtcatgttttctttccctttcagaacacattatcttttgaatgaag 260

                                                                       
Query: 61  agttttataaaatctcaaactgcagaatcactatttgtctactccttgcaagttaatgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttttataaaatctcaaactgcagaatcactatttgtctactccttgcaagttaatgct 320

                                                                       
Query: 121 ccaccccttttgtgaataaagcatgagtcttgccctgctttcttgagggaagtgcaagaa 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacccctttcgtgaataaagcatgagtcttgccctgctttcttgagggaagtgcaagaa 380

                                                                       
Query: 181 tctttttgcacaggtgttcctatgcatggtccctttggtattttgatgaaggcagatact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctttttgcacaggtgttcctatgcatggtccctttggtattttgatgaaggcagatact 440

                                                                       
Query: 241 taaaaatagcaatagttgagccggctctggtggcgaatgcctttaatcccagcacttggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaaatagcaatagttgagccggctctggtggcgaatgcctttaatcccagcacttggg 500

                                                        
Query: 301 aggcagaggcaggcagatttctgagttagaggccagcctggtcta 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggcagaggcaggcagatttctgagttagaggccagcctggtcta 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)