Query= MSMg01no326_b21.b1 MSMg01no326_b21.b1 CHROMAT_FILE:
MSMg01no326_b21.b1 PHD_FILE: MSMg01no326_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:46 2005
(252 letters)
>mm_chr13_58800102_58800753
Length = 652
Score = 464 bits (240), Expect = e-135
Identities = 249/252 (98%)
Strand = Plus / Plus
Query: 1 attaaaaacaaggtagaacgattacccagagtcaaatccccaacgttctgtggttgccaa 60
|||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct: 201 attaaaaacaaggtagaacgattacccagagtcaaatctctaatgttctgtggttgccaa 260
Query: 61 ggatctgtgctctgatgccggtggactttgggcaggtggcactggcctttctcctcgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatctgtgctctgatgccggtggactttgggcaggtggcactggcctttctcctcgtat 320
Query: 121 cagaagcatcatacaccctgcatcctgtcctcttgctgctcctccggattaatttatagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaagcatcatacaccctgcatcctgtcctcttgctgctcctccggattaatttatagt 380
Query: 181 ttccctgaaccatttggggtaagcttggcaatgttccacccaggggataccatcggacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccctgaaccatttggggtaagcttggcaatgttccacccaggggataccatcggacct 440
Query: 241 tctttgatttaa 252
||||||||||||
Sbjct: 441 tctttgatttaa 452
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space: 156249
Effective search space used: 156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no326_b21.g1 MSMg01no326_b21.g1 CHROMAT_FILE:
MSMg01no326_b21.g1 PHD_FILE: MSMg01no326_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:46 2005
(615 letters)
>mm_chr13_58965018_58966035
Length = 1018
Score = 1033 bits (534), Expect = 0.0
Identities = 594/616 (96%), Gaps = 5/616 (0%)
Strand = Plus / Minus
Query: 1 cccaccagggatacaactgttatttttcttc----ttttttttccatcttttttttttac 56
|||||||||||||| |||||||||||||||| |||||||||| | ||||||||||||
Sbjct: 652 cccaccagggatacgactgttatttttcttcttttttttttttcc-ttttttttttttac 594
Query: 57 tttagttttaaggaggttaaatgagaaaggaatcaattttaaagatggttgttacctgaa 116
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tatagttttaaggaggttaaaggagaaaggaatcaattttaaagatggttgttacctgaa 534
Query: 117 tgctatgactatgaatctcataaatacccaccaagactcgatcccacagtcaatgaggct 176
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 533 tgctatgactgtgaaactcataaatacccaccaagactcgatcccacagtcaatgagact 474
Query: 177 aatctctaattggtcacgttggtttatggccccctggggtcatctatatctgctgtcacc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aatctctaattggtcacgttggtttatggccccctggggtcatctatatctgctgtcacc 414
Query: 237 caaggccaagtctccataattttctctctcatttattcctccctggtagctggcctttta 296
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 413 caaggccaagtctgcataattttctctctcatttattcctccctgatagctggcctttta 354
Query: 297 ataaacagttaaagacaaaaataaatcagtcttttctcaaaccagacaccaccagttagt 356
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 353 ataaacagttaaagacaaaaataaatcagtcttttctcaaaccagacattaatagttagt 294
Query: 357 ttgccttttcttttctattgtgtgtaggtatgcctatccacgggcacatctgtccatgca 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 293 ttgccttttcttttctattgtgtgtaggtatgcctatccacgggcacatctgtccatgta 234
Query: 417 cacacctgtatctgtaggtctgtgctcctcacatgcatgtgtgcagatgccagaagagga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 cacacctgtatctgtaggtctgtgctcctcacatgcatgtgtgcagatgccagaagagga 174
Query: 477 gcctgggtgtcagcctccatcattctccaccttaggttttgagacagggtccttcaccga 536
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 173 gcctgggtgtcagcctccatcactctccaccttaggttttgagacagggtccttcaccga 114
Query: 537 atctgaagctcatgtattttagttagacaacttggccaacaaactctggggacccacctg 596
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 113 atctgaagctcatgtattttagttaggcaacttggccaacaagctctggggacccacctg 54
Query: 597 cctctgttccccagca 612
||||||||||||||||
Sbjct: 53 cctctgttccccagca 38
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1018
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1008
Effective search space: 609840
Effective search space used: 609840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
