Query= MSMg01no326_l04.b1 MSMg01no326_l04.b1 CHROMAT_FILE:
MSMg01no326_l04.b1 PHD_FILE: MSMg01no326_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:26 2005
(609 letters)
>mm_chr13_24138993_24140001
Length = 1009
Score = 1060 bits (548), Expect = 0.0
Identities = 595/616 (96%), Gaps = 12/616 (1%)
Strand = Plus / Plus
Query: 5 gaattctgggatagcaccaggcatgggagattcaccctagaaggtgtggcaagatggtac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgggatagcaccaggcatgggagattcaccctagaaggtgtggcaagatggtac 264
Query: 65 ttgagcataggtaagcagccacatggcagaatgtagattagagtaaatgggttgtaaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgagcataggtaagcagccacatggcagaatgtagattagagtaaatgggttgtaaaaa 324
Query: 125 gttatgatccagtcagagaagagcctagctatgtgagcaatgtattagtgaatctattct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttatgatccagtcagagaagagcctagctatgtgagcaatgtattagtgaatctattct 384
Query: 185 gagtacaagtcttcctcctgagagcacagggctggaaggaagaaccaggaccacacttct 244
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagtccaagtcttcctcctgagagcacagggctggaaggaagaaccaggaccacacttct 444
Query: 245 acagtgacccag-ctataataagtcatttagcttagcctaattctggagacacattaaaa 303
||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 acagtgacct-gtctataataagtcgtttagcttagcctaattctggagacacattaaaa 503
Query: 304 cataaaagtcaccgtggctaacatggatctgaatgaaattacttttcttattagggttgt 363
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 504 cataaaagtcaccatggctaacatggatcagaatgaaattacttttcttattagggttgt 563
Query: 364 gttttccaacacttcaaagcctggtataaagttcaaatgtcaggagaaaactcttgtcta 423
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gttttccaatatttcaaagcctggtataaagttcaaatgtcaggagaaaactcttgtcta 623
Query: 424 gtacacttcattgtgtaacttttgtgggaggagtc-ttt---------tggtttggtttt 473
||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 624 gtacacttcattgtgtaacttttgtgggaggagtcgtttggtttggtttggtttggtttt 683
Query: 474 tttgggacagggtttctttgtgtatcctaaaactagctctgtagaccaggctgggctcaa 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tttgggacagggtttctttgtgtatcctaaaactagctctgtagaccaggctgggctcaa 743
Query: 534 actcatagagatccacctgcctctgcctcttgagtactgggattaagaggaaagccacca 593
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 744 actcatagagatccacctgcctctacctcttgagtacggggattaagaggaaagccacca 803
Query: 594 ccactgcacacacgaa 609
||||||||||||||||
Sbjct: 804 ccactgcacacacgaa 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no326_l04.g1 MSMg01no326_l04.g1 CHROMAT_FILE:
MSMg01no326_l04.g1 PHD_FILE: MSMg01no326_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:27 2005
(340 letters)
>mm_chr13_24295933_24296672
Length = 740
Score = 636 bits (329), Expect = 0.0
Identities = 338/341 (99%), Gaps = 2/341 (0%)
Strand = Plus / Minus
Query: 1 aagtgctgtttgaagctgttttgctttcaaacgtgg-agtcgctttcccgaggctgtgtt 59
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 540 aagtgctgtttgaagctgttttgctttcaaacgtggaag-cgctttcccgaggctgtgtt 482
Query: 60 ctcctgcctgggtggtggggtccctgggtggagctggatatgtttcagtgctggagactc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctcctgcctgggtggtggggtccctgggtggagctggatatgtttcagtgctggagactc 422
Query: 120 cctttcctctaaccacgattctggacttgggagtacttgcttggatgcccagtgaccaag 179
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 421 cctttcctctaaccacgattctgaacttgggagtacttgcttggatgcccagtgaccaag 362
Query: 180 acacttagtagaaagagagatgggggaagtgatgttaatagatgcttattttaattggtg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acacttagtagaaagagagatgggggaagtgatgttaatagatgcttattttaattggtg 302
Query: 240 ctaccggaggatgtgtaaaattctgtgacccttcattttggaacatttcagggacttaca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctaccggaggatgtgtaaaattctgtgacccttcattttggaacatttcagggacttaca 242
Query: 300 gtgttactgagaacacttgggcaaattttgcttcaggccat 340
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtgttactgagaacacttgggcaaattttgcttcaggccat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space: 241961
Effective search space used: 241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
