BAC Information

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BAC

Clone NameMSMg01-328B24
Chromosome13 (Build37)
Map Location 15,578,399 - 15,744,628
singlet/doubletdoublet
Overlap geneGli3
Upstream geneHecw1, Mrpl32, Psma2, AW209491, EG665099, LOC670994, EG625121
Downstream geneLOC665157, Inhba, LOC625181, LOC665191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328B24.T7 (MSMg01no328_b24.b1)MSMg01-328B24.TJ (MSMg01no328_b24.g1)
ACCAG445305AG445306
length734728
length of high quality
(start - end)		577 (77 - 653)584 (75 - 658)
definitionCHROMAT_FILE: MSMg01no328_b24.b1 PHD_FILE: MSMg01no328_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:11 2005CHROMAT_FILE: MSMg01no328_b24.g1 PHD_FILE: MSMg01no328_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,744,066 - 15,744,628)(15,578,399 - 15,578,982)
sequence
NCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGNGACTCCGCG
GAATTCTTACACAGATTACCTGAAGGCACAAAAAAAGAGAGGACAGAGGA
CACAACAGTCACCAGGCCATACTTGTCTGACAGACAACAGGAAAACTCCA
ACGCCTGTGAAGCTGGAGAGGTAAACAACTCACTGGGGAATTTGGGAGAT
AGAACAAGAAATACAATTTTCACGAGATGATTTTCCTAACCATGCCAGAT
CTTAAACAGCCAAAGAGGAAACCCTCGTCATTTACCACTAAATTTATAAT
GAAAAAGCTATACTTGATCTACAGAGAATCTATTTACTAATCATTTCTCC
ATCCCATTTACATTTGAACATCCATAAGGATCTTTTGAAATGCCTTCTTT
TGCTATGATGGTTTAATATCTGGGCAACACAATAGCAGAACAAATAAATG
TGTATAATTCCCTATGCACTGCCAACATTAACAATGAGGTAGACATTGCA
AAATGATGAGTGTAGAAGTCAGGCTTGTTTTGGGGTAAAGTAATGGGCAG
GAGACTGCAAAGCTGGTGGCACTAATATTCACCCAGCATAGTAAATTGGT
CAGTGTCCTCCTTCCTTGTGCCTTCTTCCTTCCTTGTGCCTGTTCATGTG
CTTACCCAATTCAACTCAGACCTCAAATGTACTTCCCACTCAGCCTTTTT
TTGTTTTTGCACTGCTCATTTTTTCAGATCAGCA

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATGTGACAGAGCTAAGGCTGAGTTA
ACACAGGACGAAAAGTAATTTACAGATAGGCTGTCCCCAGCCATCTTTGT
AGCTCCTGATAAGGTTTCATTTCAGAATGGATAGGCGACATTTCCACTTA
CGGGCCCATTCTGCGACATCTGTGATAACAGCTTCTGGATCCTAATTGAA
ATTGGTTTCAAAATGGATTTTCACTTTTCTCTGTCGTTGGAAAATATTGA
ATGGACTCAGAGCTGCCACAGAGAACCCTAGACCTTGGAAAATGGAGCAG
GAAGCTAGGCTCATCTTTCATAACAGTGGTGATGATATGACAGTTTTGTT
ATCGGTCTTATTAATGAAATCATTGATCACTGATGAGGGAGTTAATAAAC
TACATCCCACTAGCATCTCTGAAGCTCAATTAGACTGCATTACAAACAAG
GGTGGGAGAGGAACAAACATCAGTGGGCTCCACGGAGGAAGGAGCAGTTA
GTTTTCATTTCCTCAGTAAGCATTTTGGATGAGGGCATTCAGATAGCAGC
TCAAGTAGAGAGCATTGTATAAACCAACACTGTATCCAAGACTTTTCTTT
TTGACTCATAGAGAATTATTAAACAATTCATTACGTAAAAAAATTGAGAT
AGAACAAAATTGATCTTGAAAAAATAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_b24.b1 MSMg01no328_b24.b1 CHROMAT_FILE:
MSMg01no328_b24.b1 PHD_FILE: MSMg01no328_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:11 2005
         (577 letters)



>mm_chr13_15743866_15744842
          Length = 977

 Score = 1004 bits (519), Expect = 0.0
 Identities = 552/563 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacaaaaaaagagaggacagaggacacaacagtcaccaggccatacttgtctgacagaca 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 763 cacaaaaaaagagaggacagaggacacaacagccaccaggccatacttgtctgacagaca 704

                                                                       
Query: 61  acaggaaaactccaacgcctgtgaagctggagaggtaaacaactcactggggaatttggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 acaggaaaactccaacgcctgtgaagctggagaggtaaacaactcactggggaatttggg 644

                                                                       
Query: 121 agatagaacaagaaatacaattttcacgagatgattttcctaaccatgccagatcttaaa 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 agatagaacaaggaatacaattttcacgagatgattttcctaaccatgccagatcttaaa 584

                                                                       
Query: 181 cagccaaagaggaaaccctcgtcatttaccactaaatttataatgaaaaagctatacttg 240
           ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 583 cagccaacgaggaaaccctcgtcatttatcactaaatttataatgaaaaagctatacttg 524

                                                                       
Query: 241 atctacagagaatctatttactaatcatttctccatcccatttacatttgaacatccata 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 atctacagagaatccatttactaatcatttctccatcccatttacatttgaacatccata 464

                                                                       
Query: 301 aggatcttttgaaatgccttcttttgctatgatggtttaatatctgggcaacacaatagc 360
           |||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct: 463 aggatcttttgaaatgccttcttttgctatgatggtataatatctggggaagacaatagc 404

                                                                       
Query: 361 agaacaaataaatgtgtataattccctatgcactgccaacattaacaatgaggtagacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 agaacaaataaatgtgtataattccctatgcactgccaacattaacaatgaggtagacat 344

                                                                       
Query: 421 tgcaaaatgatgagtgtagaagtcaggcttgttttggggtaaagtaatgggcaggagact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tgcaaaatgatgagtgtagaagtcaggcttgttttggggtaaagtaatgggcaggagact 284

                                                                       
Query: 481 gcaaagctggtggcactaatattcacccagcatagtaaattggtcagtgtcctccttcct 540
           |||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 283 gcaaagctggtggcaccaatattcacccagcacagtaaattggccagtgtcctccttcct 224

                                  
Query: 541 tgtgccttcttccttccttgtgc 563
           |||||||||||||||||||||||
Sbjct: 223 tgtgccttcttccttccttgtgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no328_b24.g1 MSMg01no328_b24.g1 CHROMAT_FILE:
MSMg01no328_b24.g1 PHD_FILE: MSMg01no328_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:11 2005
         (584 letters)



>mm_chr13_15578199_15579182
          Length = 984

 Score = 1098 bits (568), Expect = 0.0
 Identities = 580/584 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtgacagagctaaggctgagttaacacaggacgaaaagtaatttacagataggctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtgacagagctaaggctgagttaacacaggacgaaaagtaatttacagataggctgt 260

                                                                       
Query: 61  ccccagccatctttgtagctcctgataaggtttcatttcagaatggataggcgacatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccagccatctttgtagctcctgataaggtttcatttcagaatggataggcgacatttc 320

                                                                       
Query: 121 cacttacgggcccattctgcgacatctgtgataacagcttctggatcctaattgaaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacttacgggcccattctgcgacatctgtgataacagcttctggatcctaattgaaattg 380

                                                                       
Query: 181 gtttcaaaatggattttcacttttctctgtcgttggaaaatattgaatggactcagagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttcaaaatggattttcacttttctctgtcgttggaaaatattgaatggactcagagct 440

                                                                       
Query: 241 gccacagagaaccctagaccttggaaaatggagcaggaagctaggctcatctttcataac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccacagagaaccctagaccttggaaaatggagcaggaagctaggctcatctttcataac 500

                                                                       
Query: 301 agtggtgatgatatgacagttttgttatcggtcttattaatgaaatcattgatcactgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtggtgatgatatgacagttttgttatcggtcttattaatgaaatcattgatcactgat 560

                                                                       
Query: 361 gagggagttaataaactacatcccactagcatctctgaagctcaattagactgcattaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagggagttaataaactacatcccactagcatctctgaagctcaattagactgcattaca 620

                                                                       
Query: 421 aacaagggtgggagaggaacaaacatcagtgggctccacggaggaaggagcagttagttt 480
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 aacaagggtgggagaggaacaaacatcagtgggctccacggacgaaggagcagttagttt 680

                                                                       
Query: 481 tcatttcctcagtaagcattttggatgagggcattcagatagcagctcaagtagagagca 540
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 681 tcatctcctcagtaagcattttggatgagggcattcagatagcagctcaagtagagagcg 740

                                                       
Query: 541 ttgtataaaccaacactgtatccaagacttttctttttgactca 584
           |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 741 ttgtataaaccaacactgtatctaagacttttctttttgactca 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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