BAC Information

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BAC

Clone NameMSMg01-328H07
Chromosome13 (Build37)
Map Location 114,830,091 - 114,996,860
singlet/doubletdoublet
Overlap geneArl15, A430090L17Rik
Upstream gene2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927
Downstream geneNdufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328H07.T7 (MSMg01no328_h07.b1)MSMg01-328H07.TJ (MSMg01no328_h07.g1)
ACCAG445548AG445549
length729702
length of high quality
(start - end)
211 (96 - 306)223 (190 - 412)
definitionCHROMAT_FILE: MSMg01no328_h07.b1 PHD_FILE: MSMg01no328_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:37 2005CHROMAT_FILE: MSMg01no328_h07.g1 PHD_FILE: MSMg01no328_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,830,091 - 114,830,195)(114,996,639 - 114,996,860)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTTATTTACACATTGACCCGGAAAAATGACACTTACATACTAA
TTTAAAGTTTTTATAACATTGGTAGATCTTACCCAGTTTAGAGTATCAAG
AAGGTCCAGGCGACTGATGAGCTAGTTCTGTGGTAAAAGCACTTACTGCC
CAGCCTGAGAACCCAAGCATGACTACCTGAAGTCATGCAGACAAACCCTA
CACCTGAGAGTTGATCTCTGACGCCCCACCCCTGCACACACACACACACA
CACACGCACTCACACACACATTTTTTTTGTCATATGTACACACAGACGCT
CACACACAGCCGACAATAGGAATTATAATTCTTAGCAAGCACCGAGCATA
CATTAGCTATCTTCGCGCACCCCTGCAAGCACTGTGACCTTCATATAGCT
TGATCCTGCCCGTAGATGTCCCGTTGACTTTTATTTTGAAAATATCAGAA
AGTTGGCGCCTGAGGAGATGGCTCACCAGCTATGAGTGCGTACTGATTTT
GATAAGGCTTGTGAGTTTGATTCCCAGCACTCCCATGTTGTTCACAGTTA
CCCTGTACGTAATTCTCGCTCCGGTGGATATCCTACACTTACTTTTGCAC
CTTATTATCCCTTCACTTTTTCCTTGTTTCAACGCACCCATTCCGTAAAA
CAAGAATTATCTGACGTCATTGTATTCCN
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATACATAACTGGCTTGAAC
TCTACTATTTCTGCATCTAATAGGGTTTACTGTTTTGTTCTGTGTTCTGT
TTGAGAGAAGGACTTTCTGTGTACCCCTGCATGTCTTGAGACTCTCTATG
TAGACTTGCTGACCTCAGAATCACAAAGATCCACCTATCTCTGCTGTGAT
TAAAGGCCAAGCTCTAATAGAGAGTTTGTTGCATTAAAAGCACTTTTTCA
CTGTCACTTTTGACTGCTCCTGTTTCCCTTTTCTTCTCAGCCAATCCACT
TCCTGTTGTATCCTGTGATATGGCGGCTGCACCTCTAGTAGTTCACTTTT
AGAATGTTCTCGTTCGTGACGCCCTATTCCATTTTCATTGAGGCCATGTT
GCATTCACTGTGTTAACAATGCTTATTCTCTTAGTCCCTGTAAGTCTTCA
GCTCCAAAAATATAAGCATCATCTCGATATGTATGATATTGTTTTCTGTA
ACCATCCTATGACCAATCATGTTGAGCTTGAGCTTCAAAGTTTATCCATT
TTGCCAGTTCTACCATCTCACGTTTGCCTGCTTAATACTTATTCCGTCCC
CAGACTTTCCGTTTTTTTTCCGCCCCCCTTTCCCTACTTTTGTTTGCCCT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_h07.b1 MSMg01no328_h07.b1 CHROMAT_FILE:
MSMg01no328_h07.b1 PHD_FILE: MSMg01no328_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:37 2005
         (211 letters)



>mm_chr13_114829891_114830501
          Length = 611

 Score =  195 bits (101), Expect = 1e-54
 Identities = 104/105 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaatttaaagtttttataacattggtagatcttacccagtttagagtatcaagaaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 actaatttaaagtttttataacattggtagatcttacccagtttaaagtatcaagaaggt 260

                                                        
Query: 61  ccaggcgactgatgagctagttctgtggtaaaagcacttactgcc 105
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaggcgactgatgagctagttctgtggtaaaagcacttactgcc 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 611
Length adjustment: 9
Effective length of query: 202
Effective length of database: 602
Effective search space:   121604
Effective search space used:   121604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no328_h07.g1 MSMg01no328_h07.g1 CHROMAT_FILE:
MSMg01no328_h07.g1 PHD_FILE: MSMg01no328_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:37 2005
         (223 letters)



>mm_chr13_114996371_114996993
          Length = 623

 Score =  368 bits (190), Expect = e-106
 Identities = 214/222 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   gactctctatgtagacttgctgacctcagaatcacaaagatccacctatctctgctgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 490 gactctctatgtagacttgctgacctcagaatcacaaagatccacctatctctgctggga 431

                                                                       
Query: 61  ttaaaggccaagctctaatagagagtttgttgcattaaaagcactttttcactgtcactt 120
           |||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||| |
Sbjct: 430 ttaaaggccaagctctaagagagagtttgttgcattagaagcactttctcactgtcacct 371

                                                                       
Query: 121 ttgactgctcctgtttcccttttcttctcagccaatccacttcctgttgtatcctgtgat 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ttgactgctcctggttcccttttcttctcagccaatccacttcctgttgtatcctgtgat 311

                                                     
Query: 181 atggcggctgcacctctagtagttcacttttagaatgttctc 222
           |||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 310 atggtggctgcacctctagttgttcacttttagaatgttctc 269


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space:   131396
Effective search space used:   131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)