BAC Information

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BAC

Clone NameMSMg01-328I13
Chromosome13 (Build37)
Map Location 119,165,856 - 119,334,772
singlet/doubletdoublet
Overlap geneMrps30
Upstream geneLOC382807, Hcn1, LOC100041695, LOC674926
Downstream geneLOC668309, LOC100041278, Fgf10, LOC100041298, LOC100041757, Nnt, Paip1, LOC100041802, 4833420G17Rik, 3110070M22Rik, EG633640
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328I13.T7 (MSMg01no328_i13.b1)MSMg01-328I13.TJ (MSMg01no328_i13.g1)
ACCAG445606AG445607
length762803
length of high quality
(start - end)		649 (47 - 695)250 (78 - 327)
definitionCHROMAT_FILE: MSMg01no328_i13.b1 PHD_FILE: MSMg01no328_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:43 2005CHROMAT_FILE: MSMg01no328_i13.g1 PHD_FILE: MSMg01no328_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,165,856 - 119,166,500)(119,334,523 - 119,334,772)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCCCAAACCATCTGCGACTGTCAAATGCTACTGACAAATATTTTA
CTAAGTGAAATGGAAGACTTCGGCAGGACAATAAAAGCATGAGAAACAAA
AATCAGAGAACTCAGAATTTCTCACGGGGGTGAGAAACAGATGACATTAA
GAACTGGAAAGGAATTCATGCTAAAATTATTTTATAGTAATTTAATTTTT
AAATAATCATTGAAACGTAAGTTATGATGGCAGTCTTATTTATAGTAGCA
TAAGCTTTATCTAATGTAGAACTGAGATCAGTCAGCAGCTACTGCCAAGT
TGTACAGCCTATATGATTTATTTAGGATTTCTATGCTGTGAAGAGACACC
ATGACCACTGCATCTCTTATAACCACAACATTTAATTGGGGCTGTCTTAC
AGTTTCAGAGGTTCAGTCTATTAATATTATGGCGGGAAGCACGGCAGTGC
AGACAAGGTAAGGTACTGGAGTAGGAGCCGAGAGTTCTACATGTAGAACT
GCAGAAGTGAACTGCGATACACAGAGACCTCAAAGCCCATTCCAGTGACA
TATTTCCTCCAAAGCCACACCCATTCCAGCAAAGCTATACCTCCTAATAA
TGCCATCCCCTGTTGACCTGAAGAGGGCCACTTTACCCAAGCCACCACAC
TTATGTTTGCTTATTACCTACCGACAGCCACCATTTCTAAACACTTAAAA
TGCTATTGCATA

GAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATGTCTTGAAGTTCGTATAAGC
CATTCTTCACAAGGACAATTAACACGGAACTGGGATAATTGCTGGAGAAA
TATTGTTTTTGTTTTTCATAATTCACATTGCTCTGCTGTCTTACTGTAGG
ACCCTGTGCATTTGAAATTGGGTTGTTTTTTATGTATTTTACTATGAGTT
GTTAGTTCACCAGGTTGAATAACTCAGGTGGGGTGGCAGGTTGATTGACC
TGGGAAAACCCGGAGGCCTATAGTCAATGTGTATATGTCTCTTACCAATA
TGGGCAGGTAGAAAGTGTCCTAAGACACCCCACTATGCTATGTTCATTGT
GGAGGGCATTTAGGTTATTTTTTTCCCCCCCCCCCCCAAATGGAATGTGT
ATCATTATAGACTCCATCTATATCACGCAACAGCTCATTCTACACGATCT
CTCCTGTATCTCCGATCATTATCAGCCATCACCTCTCTGTCTCGCTGTCC
CCGTTACGCCTGCATCCCGTTCTTTATCCCTTTCACCCCTTCAATATTCT
TCTTTATCTAAATATCTTCATTCTCTCCTCCTTCTTTTAATAAACGTCCC
TCTTCTCATTTTTTCGTTTATCAAACCTATTACTCTTCTCTTTTTCTTTT
ACTCGTGCGACATAGCATTCTTTTCTTTTTCCTTCCTTCACCTTTTTCCC
GAATTTCTTTTTCACACTTTTTTCATTCTCCCTACTTAGCTTCCTTCCTT
CGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_i13.b1 MSMg01no328_i13.b1 CHROMAT_FILE:
MSMg01no328_i13.b1 PHD_FILE: MSMg01no328_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:43 2005
         (649 letters)



>mm_chr13_119165652_119166700
          Length = 1049

 Score = 1216 bits (629), Expect = 0.0
 Identities = 641/645 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccccaaaccatctgcgactgtcaaatgctactgacaaatattttactaagtgaaa 64
           ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccccaaaccaactgtgactgtcaaatgctactgacaaatattttactaagtgaaa 264

                                                                       
Query: 65  tggaagacttcggcaggacaataaaagcatgagaaacaaaaatcagagaactcagaattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggaagacttcggcaggacaataaaagcatgagaaacaaaaatcagagaactcagaattt 324

                                                                       
Query: 125 ctcacgggggtgagaaacagatgacattaagaactggaaaggaattcatgctaaaattat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcacgggggtgagaaacagatgacattaagaactggaaaggaattcatgctaaaattat 384

                                                                       
Query: 185 tttatagtaatttaatttttaaataatcattgaaacgtaagttatgatggcagtcttatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttatagtaatttaatttttaaataatcattgaaacgtaagttatgatggcagtcttatt 444

                                                                       
Query: 245 tatagtagcataagctttatctaatgtagaactgagatcagtcagcagctactgccaagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatagtagcataagctttatctaatgtagaactgagatcagtcagcagctactgccaagt 504

                                                                       
Query: 305 tgtacagcctatatgatttatttaggatttctatgctgtgaagagacaccatgaccactg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtacagcctatatgatttatttaggatttctatgctgtgaagagacaccatgaccactg 564

                                                                       
Query: 365 catctcttataaccacaacatttaattggggctgtcttacagtttcagaggttcagtcta 424
           |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 565 catctcttataagcacaacatttaattggggctgtcttacaggttcagaggttcagtcta 624

                                                                       
Query: 425 ttaatattatggcgggaagcacggcagtgcagacaaggtaaggtactggagtaggagccg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttaatattatggcgggaagcacggcagtgcagacaaggtaaggtactggagtaggagccg 684

                                                                       
Query: 485 agagttctacatgtagaactgcagaagtgaactgcgatacacagagacctcaaagcccat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agagttctacatgtagaactgcagaagtgaactgcgatacacagagacctcaaagcccat 744

                                                                       
Query: 545 tccagtgacatatttcctccaaagccacacccattccagcaaagctatacctcctaataa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tccagtgacatatttcctccaaagccacacccattccagcaaagctatacctcctaataa 804

                                                        
Query: 605 tgccatcccctgttgacctgaagagggccactttacccaagccac 649
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgccatcccctgttgacctgaagagggccactttacccaagccac 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no328_i13.g1 MSMg01no328_i13.g1 CHROMAT_FILE:
MSMg01no328_i13.g1 PHD_FILE: MSMg01no328_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:43 2005
         (250 letters)



>mm_chr13_119334323_119334972
          Length = 650

 Score =  484 bits (250), Expect = e-141
 Identities = 250/250 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgtcttgaagttcgtataagccattcttcacaaggacaattaacacggaactgggata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tatgtcttgaagttcgtataagccattcttcacaaggacaattaacacggaactgggata 391

                                                                       
Query: 61  attgctggagaaatattgtttttgtttttcataattcacattgctctgctgtcttactgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 attgctggagaaatattgtttttgtttttcataattcacattgctctgctgtcttactgt 331

                                                                       
Query: 121 aggaccctgtgcatttgaaattgggttgttttttatgtattttactatgagttgttagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aggaccctgtgcatttgaaattgggttgttttttatgtattttactatgagttgttagtt 271

                                                                       
Query: 181 caccaggttgaataactcaggtggggtggcaggttgattgacctgggaaaacccggaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 caccaggttgaataactcaggtggggtggcaggttgattgacctgggaaaacccggaggc 211

                     
Query: 241 ctatagtcaa 250
           ||||||||||
Sbjct: 210 ctatagtcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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