BAC Information

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BAC

Clone NameMSMg01-328L22
Chromosome13 (Build37)
Map Location 67,590,257 - 67,590,628
singlet/doubletsinglet
Overlap genenone
Upstream geneC330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik
Downstream geneZfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328L22.T7 (MSMg01no328_l22.b1)MSMg01-328L22.TJ (MSMg01no328_l22.g1)
ACCAG445762AG445763
length758732
length of high quality
(start - end)		375 (48 - 422)345 (77 - 421)
definitionCHROMAT_FILE: MSMg01no328_l22.b1 PHD_FILE: MSMg01no328_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:59 2005CHROMAT_FILE: MSMg01no328_l22.g1 PHD_FILE: MSMg01no328_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCG
GAATTCATGATGAGTTTATCTTGTAGAGAAACCTACATACAATGACTTGG
TAGGATGCTTTTCTAGTATCTATACTCCATAATAGCAAATGAACAAAACT
AATATCAATAGTGTAGCAATGTCTATTCTTATAACTTATTTAGTAATGGG
ATATTATGGAAGTATAGCACACACATATTAATACAGAATGTGGATAAACA
TGAGGCATTGTTTAGAAATGATATGATGTATTTGAGATGACTGAAGTCAT
TACAGACATCAGAATCCTGCAGATCACTCTATTCTGAAGATAGCAATCTG
TTATATAATCAAATAAGTGCATGGCTGAGGATATTGGAGACACAGGAGCA
TGGAGCAAGGATGGTCTGCTGACCCCCCCCTTTAAAGAGAGGGGCTAAGA
CAACAGAAATGAGTCCTGCTGGCAGAGCAAGATGGCAGGGTTCCCTATGC
CATTTGCAGTCAACTGATTTTCATGATGGGCCCCCACATGTCAAAGTGGA
GCTGCTGGATTGTTTGTTGTTTGTCATACTGTATTTTTAGTCCTTGGTTC
TGGCTCCTCTTTGTGCTTCGAACATTCCTGCTTTTGTTTTGGTTCTGCTT
ATTCTCTTTTCCCCCTGTTATTCCCCGTTACTACTCTCCCCCATTATTTT
TACCTTCTGTACCTCACTTATTTACATATTGTTCTTCTCTTCTCCTGTTT
CCTATCGT

NACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCATCTCTTCTTTGGAAGGCTTAT
TCTTGTGCAGTTCATGCTTGAGTCAAAGTTACAAACCCCATTGCTAGCTG
TCTGGGAGCAGTAGTATGCTAGCAGCCTTCAGATGAACATGTAGAACTCT
CAGCTCCTCCTGTACCATGCGTGCCTGGATGCTGCCATGTTCCCTCCTTA
TTACTGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAATTAAATGTTGT
CTTTTATAAGACTTGCCTTGGTTGTGGTGTCTGTTCACAGCTCTAAAACC
CTAAGACAACTAGGCTATGTACTATTTACTGAACTAAGACAGGAGTTGGT
ACCAGGAGTGGGGTATTGTTGCCACACCCCTGATCACGCATTTGTCTGGA
AGAATGTGGATTTGGGGACTTTGGATTGGGAAGCAGTAGAATGCTTCAAA
TGGGGCTGAAGGGGCTATCCTAGAACGAATATGAAAGACTTTGTTGCTGA
TAGTGATGCGGCCTACTGACCGTTTTTGTGGTATTTTGGTGAACATAGTG
TCTGTTTTTTGTCCTTGTCTGATGCTACTACTTGACCCCTATCTCCTCTA
TTTCTCCACCTCTTTCCATTGTTCCCTTATTCCGGACACCATTTTCTTAT
ACACTCTTTTCTCTTGCCACCTGTCCATTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_l22.b1 MSMg01no328_l22.b1 CHROMAT_FILE:
MSMg01no328_l22.b1 PHD_FILE: MSMg01no328_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:59 2005
         (375 letters)



>mm_chr13_67590054_67590828
          Length = 775

 Score =  688 bits (356), Expect = 0.0
 Identities = 368/372 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcatgatgagtttatcttgtagagaaacctacatacaatgacttggtaggatgctt 63
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gaattcatgatgagttcatattgtagagaaacctacatacaatgacttggtaggatgctt 516

                                                                       
Query: 64  ttctagtatctatactccataatagcaaatgaacaaaactaatatcaatagtgtagcaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ttctagtatctatactccataatagcaaatgaacaaaactaatatcaatagtgtagcaat 456

                                                                       
Query: 124 gtctattcttataacttatttagtaatgggatattatggaagtatagcacacacatatta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gtctattcttataacttatttagtaatgggatattatggaagtatagcacacacatatta 396

                                                                       
Query: 184 atacagaatgtggataaacatgaggcattgtttagaaatgatatgatgtatttgagatga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 atacagaatgtggataaacatgaggcattgtttagaaatgatatgatgtatttgagatga 336

                                                                       
Query: 244 ctgaagtcattacagacatcagaatcctgcagatcactctattctgaagatagcaatctg 303
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 335 ctgaagtcattacagacatcagaatcctgcagatcactcgagtctgaagatagcaatctg 276

                                                                       
Query: 304 ttatataatcaaataagtgcatggctgaggatattggagacacaggagcatggagcaagg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttatataatcaaataagtgcatggctgaggatattggagacacaggagcatggagcaagg 216

                       
Query: 364 atggtctgctga 375
           ||||||||||||
Sbjct: 215 atggtctgctga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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