BAC Information

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BAC

Clone NameMSMg01-329B20
Chromosome13 (Build37)
Map Location 87,064,948 - 87,065,068
singlet/doubletsinglet
Overlap genenone
Upstream geneCox7c, LOC100042887, LOC100042893
Downstream geneLOC675707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329B20.T7 (MSMg01no329_b20.b1)MSMg01-329B20.TJ (MSMg01no329_b20.g1)
ACCAG446033AG446034
length770746
length of high quality
(start - end)
330 (45 - 374)341 (77 - 417)
definitionCHROMAT_FILE: MSMg01no329_b20.b1 PHD_FILE: MSMg01no329_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:27 2005CHROMAT_FILE: MSMg01no329_b20.g1 PHD_FILE: MSMg01no329_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTAATTTGGCGTCAGAGTTTCTGAGTGTGGGATGGCAACCCCATC
TCTTCACTTGGTGCCCTGGCTTTTTACTGGAGGTAGACTCTACAAGTTCC
ATCTCCCCACTGTTGGACATTTTATTTGAGGTCCCTCTCTCTGAGTCCTG
ACCTTCATTCACCTCCAAGGGCTCTGGTACATTCTACAGCATCCCCCTGC
CCCCTTCTATTTCAGAATGACCATTGTTTTTGATCTTAGTCATTCTGATT
GATGTAGTAAGGTGGATACACTTAAATAAAATGTGTTTGAAAGGTAAACT
ATATAGACATTGGCATTATTTACCAAATTAAATTAATTGTAAAAGTTTGT
ATATGATTTTTTATCCCCCACCACCCATATGTATTTCCAGAAATGTCTCG
TAGTCCTTTTTAACTTAGTCACTTGATTCGCTCATATTCTCCACTTGGCT
GCTGATTCCTTTCATCCTCGTCCCTATTCTTTCAATTCTTCTTCCCTCCC
TTCCCTTTTTCTATATCCATTATTTGTGTTTTTCCCCGCTTTTTTATCTT
TTTTTTATCCCTTATTCACCCCTTCTTCCTTTTCTCTCCCTTTTTTCCCT
TCCCCTATTTCCCCCTTTTTTTTTTTTTTTTTCCCCCCCCCTTTTTTCTT
TCGACTCTTTCCCTCCATGTTACCCTTTCCCTTTTCTTTATCCCTCTTTT
TTTTTAATACCTTCATTTTG
NCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCAGTAGCATTCATACCAGGAG
TCAAATAATGCACATAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACA
AGTTACTATGCTAAATGACAGACTGATCAGATATAATTCTAACCAATTTA
GACCTACTTACTTTTGACGAATGTTGTAAATGGCAAATATATATGGGGAG
TATAGTTCTCCCACTTTGTGTGTGCCATTGTGCTTTCTTCTGTAGATAAT
AGTTGGTAGGGTGGATAGCAATCTGTGTCCTTTCTAATTCTGTATATTTT
AAGTGAGGCCATCCCTCGCCACAGTCCCATTCTCCAGTGGGTGTCTCTTG
CAGGTCCATAATCAGGATAGGCTCCTGCATAGTCACTTCTTGAGCTAATT
GATCTGCCTGGATATTGCCCTGAGCCACTGTGTTTCTTCCCTTCTGATGA
CCTGGGTAATGACTAATACTCACAATTGCCAATTTCATCAGATTCAAGAA
TTCCTGCTTGTTTTTTATTACTTTTCCCTCTGGAGTGAACAGTCCTCTCT
CTTGAAATATAAACGTGAACTGTGTCAAAGGTTAATCTGCTATCTTTGCA
TATGCAATATTTTATTGCAAACCAAAAGCATCAAAGTTTTTGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_b20.g1 MSMg01no329_b20.g1 CHROMAT_FILE:
MSMg01no329_b20.g1 PHD_FILE: MSMg01no329_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:27 2005
         (341 letters)



>mm_chr13_87064529_87065269
          Length = 741

 Score =  219 bits (113), Expect = 3e-61
 Identities = 119/121 (98%)
 Strand = Plus / Plus

                                                                       
Query: 220 gggagtatagttctcccactttgtgtgtgccattgtgctttcttctgtagataatagttg 279
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 420 gggagtatagttctcccactttgtgtgtgccattgtgctttcttctctagataatagttg 479

                                                                       
Query: 280 gtagggtggatagcaatctgtgtcctttctaattctgtatattttaagtgaggccatccc 339
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gtagggtggttagcaatctgtgtcctttctaattctgtatattttaagtgaggccatccc 539

            
Query: 340 t 340
           |
Sbjct: 540 t 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)