BAC Information

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BAC

Clone NameMSMg01-329B22
Chromosome13 (Build37)
Map Location 25,349,591 - 25,501,795
singlet/doubletdoublet
Overlap geneNrsn1
Upstream geneLrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a
Downstream geneTpi-rs8, LOC214973, LOC666221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329B22.T7 (MSMg01no329_b22.b1)MSMg01-329B22.TJ (MSMg01no329_b22.g1)
ACCAG446037AG446038
length754742
length of high quality
(start - end)		482 (45 - 526)484 (76 - 559)
definitionCHROMAT_FILE: MSMg01no329_b22.b1 PHD_FILE: MSMg01no329_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:28 2005CHROMAT_FILE: MSMg01no329_b22.g1 PHD_FILE: MSMg01no329_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,501,317 - 25,501,795)(25,349,591 - 25,350,074)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTGCTAGAACCGCTGGAAATCGTAACCTCAGCAACATTTTTATGA
GATGGAGGCTCTGTGGTCCTTCCTCCATGCTTCATGAACACACAGTAAGG
TAAGGTGGGGCTCTTCCTAAGCATTAAGGCATCACAAAATGAAGATGAGC
ACAGAAGATGCACATAAATAGTGGGCTTTCTGTTCCAACAAAGGGAACCA
CTACTAGGAAATATCTCTATAAGGAAAGAAGAAAGGTGAAACTAGTGTTA
AGAACAATAAATCAAATGCATCCCTGATGAACAACTATTATTTGGGGAGA
AAGGTACTGTTACATTTCAAATGAGTTTCTATACTTCTGTATAACTACCT
TTCTATGTCTATGACTGAACCCCCACTCAATGAATCAATATAGCAAAAAT
CAGTCCTGCAGACTTTAAGTGGAACCCACTCTCTCTTTTAGCTTCAGACA
GCTTCAGAATCCACAACTGTGATCTAGTTGGGAAGTGGACTGCGTTCCTA
AATGAAAAGTTTGCTTTCACCAAGCTCCTCCTATTTATTATCAGGTTTCC
AACCCTGATCCATCATAGTCCCTTACGCCAGCATTTTTCCCTCACACATT
TCCCCCAATTGTATTTTTTTTCCCTGTACACTTTTATCGTTAAAATTTAC
TCGACATGATATCCTCCCGCTTCACCCCCGCCTATTCCGGTACCCCCTGT
AATA

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGTGTGTGCCAAGCTGGCGGGTAG
AGCCAGCAGCCAGCCTCTGTGGCACAGCTGCTTTGGCACAGAGGAGGTAA
TAATGACTACTGGAGGCCAGAAGCAGTTAGGCATGGAGGAACAGCCTGGA
GGGAAGGAGGCTGGATGGAGCCGGGCGTGAAGGAGCCATCTGTGATGGAG
ATCATTCAAAGCTCATAGGGAGTTTGAACTGGATTTTGATCGTTCTCTCT
TTTTGAGGACTGCTGTAGCATTCTCTGTAAGCCCTGAGCTCTGAGTAGCG
AGGGATTGTGCCCATGACAGTTGCAGGGTCTCGTTCATTGTTACCTACCT
ACTCCAGCTACATTCTGACCCCCGCCAAGGGAAGCGTGATGTGAAACTGG
TTTGGCTGTTTCTTCAGGCCTGACTCTACCTATTACGCATAGTACCCCTT
CACCTGAGTAATGAACTTACCCATCAGCCCATGTACTTTAGAGATTGTCC
CCTCTAGCACACAGACAAAAGTAATGCCTTCCCAATTCAATAATTATTTT
AGTTTCTACCCCCGATGCCCTGCTCCCGCTGATGTGTTGGTACCCCCCTT
TGATATATATTTCCCCATTATGTCCTAGACAATTCTCTCCACCTGTCTCC
AAATCTTGTCCTCCCCCTACTAATGGATTCCCTTTGTTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_b22.b1 MSMg01no329_b22.b1 CHROMAT_FILE:
MSMg01no329_b22.b1 PHD_FILE: MSMg01no329_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:28 2005
         (482 letters)



>mm_chr13_25501114_25501995
          Length = 882

 Score =  864 bits (447), Expect = 0.0
 Identities = 471/479 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttgctagaaccgctggaaatcgtaacctcagcaacatttttatgagatggag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ggaattccttgctagaaccgctggaaatcgtaacctcagcaacatttttatgagatggag 623

                                                                       
Query: 64  gctctgtggtccttcctccatgcttcatgaacacacagtaaggtaaggtggggctcttcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gctctgtggtccttcctccatgcttcatgaacacacagtaaggtaaggtggggctcttcc 563

                                                                       
Query: 124 taagcattaaggcatcacaaaatgaagatgagcacagaagatgcacataaatagtgggct 183
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 taatcattaaggcatcacaaaatgaagatgagcacagaagatgcacataaatagtgggct 503

                                                                       
Query: 184 ttctgttccaacaaagggaaccactactaggaaatatctctataaggaaagaagaaaggt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttctgttccaacaaagggaaccactactaggaaatatctctataaggaaagaagaaaggt 443

                                                                       
Query: 244 gaaactagtgttaagaacaataaatcaaatgcatccctgatgaacaactattatttgggg 303
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 442 gaaactagtgttaagaacaataaatcaaatgcgtccctgatgaacaactattatttgggg 383

                                                                       
Query: 304 agaaaggtactgttacatttcaaatgagtttctatacttctgtataactacctttctatg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agaaaggtactgttacatttcaaatgagtttctatacttctgtataactacctttctatg 323

                                                                       
Query: 364 tctatgactgaacccccactcaatgaatcaatatagcaaaaatcagtcctgcagacttta 423
           |||||||||||| |   | |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 322 tctatgactgaatcaatattcaatggatcaatatagcaaaaatcagtcctgcagacttta 263

                                                                      
Query: 424 agtggaacccactctctcttttagcttcagacagcttcagaatccacaactgtgatcta 482
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agtggaacccactctctcttttagcttcagacagcttcagaatccacaactgtgatcta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no329_b22.g1 MSMg01no329_b22.g1 CHROMAT_FILE:
MSMg01no329_b22.g1 PHD_FILE: MSMg01no329_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:28 2005
         (484 letters)



>mm_chr13_25349391_25350274
          Length = 884

 Score =  890 bits (460), Expect = 0.0
 Identities = 478/484 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgtgtgccaagctggcgggtagagccagcagccagcctctgtggcacagctgctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgtgtgccaagctggcgggtagagccagcagccagcctctgtggcacagctgctttg 260

                                                                       
Query: 61  gcacagaggaggtaataatgactactggaggccagaagcagttaggcatggaggaacagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcacagaggaggtaataatgactactggaggccagaagcagttaggcatggaggaacagc 320

                                                                       
Query: 121 ctggagggaaggaggctggatggagccgggcgtgaaggagccatctgtgatggagatcat 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 ctggagggaaggaggctggatggagccgggcatgaaggagccatctgtgatggagatcat 380

                                                                       
Query: 181 tcaaagctcatagggagtttgaactggattttgatcgttctctctttttgaggactgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaagctcatagggagtttgaactggattttgatcgttctctctttttgaggactgctg 440

                                                                       
Query: 241 tagcattctctgtaagccctgagctctgagtagcgagggattgtgcccatgacagttgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagcattctctgtaagccctgagctctgagtagcgagggattgtgcccatgacagttgca 500

                                                                       
Query: 301 gggtctcgttcattgttacctacctactccagctacattctgacccccgccaagggaagc 360
           ||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct: 501 gggtctcgttcattgttacctacctactccagctacattctgagctctgccaagggaagc 560

                                                                       
Query: 361 gtgatgtgaaactggtttggctgtttcttcaggcctgactctacctattacgcatagtac 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 gtgatgtgaaactggtttggctgtttcttcaggcctgactctacctagtacgcatagtac 620

                                                                       
Query: 421 cccttcacctgagtaatgaacttacccatcagcccatgtactttagagattgtcccctct 480
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 cccttcacctgagtaatgaacttacccatcagcccgtgtactttagagattgtcccctct 680

               
Query: 481 agca 484
           ||||
Sbjct: 681 agca 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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