BAC Information

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BAC

Clone NameMSMg01-329H23
Chromosome13 (Build37)
Map Location 93,500,170 - 93,683,250
singlet/doubletdoublet
Overlap geneThbs4, EG624619
Upstream geneRasgrf2, Msh3, Dhfr, 6430502M16Rik, 4930405M20Rik, Zfyve16, LOC100039070, Spz1, Serinc5, Ppia-ps13_1124.1
Downstream geneEG218444, Papd4, LOC100039163, Homer1, Jmy, EG619883, Bhmt, Bhmt2, Dmgdh, Arsb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329H23.T7 (MSMg01no329_h23.b1)MSMg01-329H23.TJ (MSMg01no329_h23.g1)
ACCAG446317AG446318
length783757
length of high quality
(start - end)
249 (76 - 324)519 (75 - 593)
definitionCHROMAT_FILE: MSMg01no329_h23.b1 PHD_FILE: MSMg01no329_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:58 2005CHROMAT_FILE: MSMg01no329_h23.g1 PHD_FILE: MSMg01no329_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,500,170 - 93,500,418)(93,682,734 - 93,683,250)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGTGACTGCGCGGA
ATTCTCACGGAAGTTTCAAAAAGAAGACACAGAAGAAAGCCCGGCATGGT
GGTGTGGTAGATGCTGGCGATCTGCAGTGCCTGGAAGGTGGAGACAGAGG
CATGGACAGCGAGATCTAGTCTCAAATAAAAGCCACTCGAGAGTTCTAAA
TGTCCTTGCCTGTAGAGGATAAATGAGCTTCTCTTGATACATTTTGTAAT
ACTCTTGCCAGCACTCATAAACCTATCTGGCATTGAAATGAACTTGACCA
AATGTCCCCATTAGACCTTTGAGGTGGTATTATGTATAATGAAATGATCA
AAAAAGTCCTTTATGCAGCAAGCTCGGCAATTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGCGCCCCCCCCTGTTTTTTTTGTATTATACTTAT
CGCCTCCCCCCTCTTCTTCTGTTACTCAACCTATTTTTTCTGCCTCTTGT
CCTCCCCCTCTACTTTTTCTCTCACCTTCTCGTTTCCTTTATTTTACCCT
TTTCCCCCCCTTCTTTATTTTTCCCCCCCTTTCTCTTTCCCTCTCTTATA
TATTTTCTCCCCCCCCTATCTGTTTCACCACTTCCTTTTTTTCATCCTCT
CCTTATATTTCCATTTTCCCACTTCTCTTTTTCCTCCCCTCACTCCCCCC
TTCCTAACTTTTTTCTTTTTTCCCCCTTCCCCCTTTCCCATTCCCCCCTT
CTCTCCCCCTTTTCCCTCCCCTCCCTTTCCTTA
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCGTGAATTTTGCTCTCAACCCACCAC
CATACAACTTCAGGCCAGGACTCCTCAAGCCTAAGGACAACTGGAACCCC
TTCAGCTCAATGAGAGAGGTATCCAGAAGGGTGAGTGAGCAGCTCTGGGG
GAGAAGAGCAAGTCCTAGCAGTAGTCCCCAGCTTCATCTGCTGGTATCAG
CCGTTCTTTCTCCTCTGCTCAGGCAAACAGCACCACCTCCCATCTTCTTC
AGAGAACCCACAATAGCCCCACTATTCACCCTTAGACAGCTTCTCCACTG
ACCCCTCCAGGCCTTCCTGAAAGGCATTTCTGATAAGCACTACATTCTCC
ATCTTGTTCCACTTCCAAGAAGGTCTGCACATACCTAACAGATGGCTGCC
ACCTCCCCTCACCCCATCTCCTCCCAGACAGCTTAGTGCCTGCCACTGCT
GACCCCTTGAGTGGCAGCATGGCTCTGTCCCACCAGCACCAGCCTGAGCG
CATGGCCTCTGTCTCGCCCATGCCCAAAGCTAGCACTTATCTGTGCCCTG
CCTCAGTCCTGCACCACTTGGAACACTGATGGGAAAATTGAGCATCAAAA
GTCACCTGAGTTTCATCCCTCCTGATCTCCTGAGGAGCATATTAGGGGTT
TAAAAGAATACAACCCGGTTTTGACCAGGGGTGCGAATACTGTCCATTAC
TAGTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_h23.b1 MSMg01no329_h23.b1 CHROMAT_FILE:
MSMg01no329_h23.b1 PHD_FILE: MSMg01no329_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:58 2005
         (249 letters)



>mm_chr13_93499970_93500618
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacacagaagaaagcccggcatggtggtgtggtagatgctggcgatctgcagtgcctgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacacagaagaaagcccggcatggtggtgtggtagatgctggcgatctgcagtgcctgga 260

                                                                       
Query: 61  aggtggagacagaggcatggacagcgagatctagtctcaaataaaagccactcgagagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtggagacagaggcatggacagcgagatctagtctcaaataaaagccactcgagagtt 320

                                                                       
Query: 121 ctaaatgtccttgcctgtagaggataaatgagcttctcttgatacattttgtaatactct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaaatgtccttgcctgtagaggataaatgagcttctcttgatacattttgtaatactct 380

                                                                       
Query: 181 tgccagcactcataaacctatctggcattgaaatgaacttgaccaaatgtccccattaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccagcactcataaacctatctggcattgaaatgaacttgaccaaatgtccccattaga 440

                    
Query: 241 cctttgagg 249
           |||||||||
Sbjct: 441 cctttgagg 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no329_h23.g1 MSMg01no329_h23.g1 CHROMAT_FILE:
MSMg01no329_h23.g1 PHD_FILE: MSMg01no329_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:58 2005
         (519 letters)



>mm_chr13_93682534_93683452
          Length = 919

 Score =  915 bits (473), Expect = 0.0
 Identities = 506/517 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgtgaattttgctctcaacccaccaccatacaacttcaggccaggactcctcaagcctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 cgtgaattttgctctcaacccaccaccatacaacttcaggccaggactcctcaagcctaa 658

                                                                       
Query: 61  ggacaactggaaccccttcagctcaatgagagaggtatccagaagggtgagtgagcagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ggacaactggaaccccttcagctcaatgagagaggtatccagaagggtgagtgagcagct 598

                                                                       
Query: 121 ctgggggagaagagcaagtcctagcagtagtccccagcttcatctgctggtatcagccgt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 597 ctgggggagaagagcaagtcctagcagtagtccccagcttcatctgctggtatcagccat 538

                                                                       
Query: 181 tctttctcctctgctcaggcaaacagcaccacctcccatcttcttcagagaacccacaat 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tctttgtcctctgctcaggcaaacagcaccacctcccatcttcttcagagaacccacaat 478

                                                                       
Query: 241 agccccactattcacccttagacagcttctccactgacccctccaggccttcctgaaagg 300
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 477 agccccactattcacccttagacagcttctccactgacccctccatcccttcctgaaagg 418

                                                                       
Query: 301 catttctgataagcactacattctccatcttgttccacttccaagaaggtctgcacatac 360
           |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 417 catttctgataaacactacattctccatcctgttccacttccaagaaggtctgcacatac 358

                                                                       
Query: 361 ctaacagatggctgccacctcccctcaccccatctcctcccagacagcttagtgcctgcc 420
           ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 357 ctaacggatggctgccacctcccctcaccccaactcctcccagacagcttagtgcctgcc 298

                                                                       
Query: 421 actgctgaccccttgagtggcagcatggctctgtcccaccagcaccagcctgagcgcatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 297 actgctgaccccttgagtggcagcatggctctgtcccaccagcaccagcctaagcccatg 238

                                                
Query: 481 gcctctgtctcgcccatgcccaaagctagcacttatc 517
           |||||||||||||||||||||||||| ||||||||||
Sbjct: 237 gcctctgtctcgcccatgcccaaagccagcacttatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)