BAC Information

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BAC

Clone NameMSMg01-330J17
Chromosome13 (Build37)
Map Location 45,856,833 - 45,857,187
singlet/doubletsinglet
Overlap geneAtxn1
Upstream geneJarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr
Downstream gene5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153, Kif13a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330J17.T7 (MSMg01no330_j17.b1)MSMg01-330J17.TJ (MSMg01no330_j17.g1)
ACCAG447116AG447117
length739743
length of high quality
(start - end)
319 (45 - 363)355 (389 - 743)
definitionCHROMAT_FILE: MSMg01no330_j17.b1 PHD_FILE: MSMg01no330_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:21 2005CHROMAT_FILE: MSMg01no330_j17.g1 PHD_FILE: MSMg01no330_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCCTTATTTCTAAGAAGTTTGCATAAATGTTTCCTGGAGTATTAT
ATATATATACACCAACAAATAAGGCGTGTGTGTATGTGTGTGTGTGTGTG
TGTGTTAGGCTGCTTTCCTTGTTCTCTCTCCACTTTACATGTTAAGGACA
CAGGGTCTTCTACTGAACTCAGAGCTCACTCTTTAAGATAGTCTGGATCG
CCACCGTTCTGGGGATTCCTGTCTCCACAAGGTCCCAAGATCTTTGGAAA
CTGTATCCCCAGTACCTCCAATGTTCTTATGATTGTTCTAGGGCAAAAGT
AGTCAGTTCAGTTTGATTTTCCTCCCGACCAANCCCCTCTCAGACAGCCT
GTAAGAACCACTCACTGATAACCAAAACAAAAAAAAAACTGAGAATACCT
ACCTACTCGGAGAGATGCCGATGCAAACCTAATTACAGGAAGGAAGCCAT
CAGTCAGTCACCTTTTCATACAATTAAAAATGACAGGCCATGACCTTGTT
ATGAACGACTTACGTTGATGTTGCATATATACCCGGTGCACTATGAAAAC
ATATTGTTTTGAAAGAACGAATGAAATAATTTGGGGGGTGCCTATTATCC
TCACTTTCTATTGATGAGATGCTACACCTGTTATCTGCTCCTGTTTTTTA
TTTTGACATTGCTCTAAACTTTACTACTAAGTATCCTTA
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGGGGGAACAGAGGGAAGGCA
AAATGAGAAGATGACCTTTTCTAAACGGTAGTCGGTGAGATGGCATATCC
CATTCTTAATAGCATTAAACATACAAAATACCTAGGGATTATACTTAAAG
AGAAATAAGGAAGAATCTATATAATTAAACAGTGTTGATGGACAGAAAAG
ACAGACAACAGCAGACACCTGCCCTTTCCTAGAACAAGAAGTTAGCAGAA
CAGTTCTTCCCTAATTAGCATATAAACTTGACACAATGTTTAAATACCAA
TAAGCAAGTTAATCCTGATTTTTTTAACCACCCCCCGGAAGGAGTACTCA
TAAAGATGATGTAGAAAGAAACAGTGAAAGATTAACTTGCTAGCCATGGA
AAGATACCATGCCTCCAAAAAGTAAAATAGAGAGCCAGAGGGGCAAGCAG
AACCAAGCTGATCCAAGTAGATCCCCAAACAGACTGCAACTCAATACATA
GTAAAGTTGGCATTGCATTTGATCAGAGAAAGAGGGACTTTCAATAACAA
TCTAGGAAAAACAAAACCATACTGTTAGATCCCTAATATACATCCAACAT
GGAGTAACAGCCAGAGGACCAAAAAATTCAAATGAAATATTGGCAGCATA
AACATTTGAGGAAGAGCCTTGAACGTGTTATGTCAAGCAGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_j17.g1 MSMg01no330_j17.g1 CHROMAT_FILE:
MSMg01no330_j17.g1 PHD_FILE: MSMg01no330_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:21 2005
         (355 letters)



>mm_chr13_45856633_45857387
          Length = 755

 Score =  648 bits (335), Expect = 0.0
 Identities = 350/355 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggagtactcataaagatgatgtagaaagaaacagtgaaagattaacttgctagccatg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 aaggagtactcataaagatgatgtagaaagaaacagtgaaagattagcttgctagccatg 260

                                                                       
Query: 61  gaaagataccatgcctccaaaaagtaaaatagagagccagaggggcaagcagaaccaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaagataccatgcctccaaaaagtaaaatagagagccagaggggcaagcagaaccaagc 320

                                                                       
Query: 121 tgatccaagtagatccccaaacagactgcaactcaatacatagtaaagttggcattgcat 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 tgatccaagtagatccccaaacagactgcaactcaatgcatagtaaagttggcattgcat 380

                                                                       
Query: 181 ttgatcagagaaagagggactttcaataacaatctaggaaaaacaaaaccatactgttag 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatcagagaaagagggactttcaataacaatctaggaaaaacaaaaccatactgttag 440

                                                                       
Query: 241 atccctaatatacatccaacatggagtaacagccagaggaccaaaaaattcaaatgaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atccctaatatacatccaacatggagtaacagccagaggaccaaaaaattcaaatgaaat 500

                                                                  
Query: 301 attggcagcataaacatttgaggaagagccttgaacgtgttatgtcaagcaggga 355
           ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 attggcaacataaacatttgaggaagagccttgaacgtgttatgtcaagtaggga 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)