Query= MSMg01no331_e19.b1 MSMg01no331_e19.b1 CHROMAT_FILE:
MSMg01no331_e19.b1 PHD_FILE: MSMg01no331_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:11 2005
(116 letters)
>mm_chr13_24345482_24345999
Length = 518
Score = 217 bits (112), Expect = 2e-61
Identities = 116/118 (98%), Gaps = 2/118 (1%)
Strand = Plus / Minus
Query: 1 gatattgat--tatatatataccgcatagctctaagccataaaaacagatccacttataa 58
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gatattgattatatatatataccgcatagctctaagccataaaaacagatccacttataa 259
Query: 59 tgcttggttttgctttgctacatttaagatctgatgtcatctcttaatttgttttggc 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgcttggttttgctttgctacatttaagatctgatgtcatctcttaatttgttttggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 518
Length adjustment: 8
Effective length of query: 108
Effective length of database: 510
Effective search space: 55080
Effective search space used: 55080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no331_e19.g1 MSMg01no331_e19.g1 CHROMAT_FILE:
MSMg01no331_e19.g1 PHD_FILE: MSMg01no331_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:11 2005
(560 letters)
>mm_chr13_24139005_24139964
Length = 960
Score = 930 bits (481), Expect = 0.0
Identities = 543/569 (95%), Gaps = 12/569 (2%)
Strand = Plus / Plus
Query: 1 ggatagcaccaggcatgggagattcaccctagaaggtgtggcaagatggcacttgagcat 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ggatagcaccaggcatgggagattcaccctagaaggtgtggcaagatggtacttgagcat 260
Query: 61 aggtaagcagccacatggcagaatgtagattagagtaaatgggttgtaaaaagttatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtaagcagccacatggcagaatgtagattagagtaaatgggttgtaaaaagttatgat 320
Query: 121 ccagtcagagaagagcctagctatgtgagcaatgtattagtgaatctattctgagtacaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ccagtcagagaagagcctagctatgtgagcaatgtattagtgaatctattctgagtccaa 380
Query: 181 gtcttcctcctgagagcacagggctggaaggaagaaccaggaccacacttctacagtgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcttcctcctgagagcacagggctggaaggaagaaccaggaccacacttctacagtgac 440
Query: 241 ccag-ctataatatgtcatttagcttagcctaattctggagacacattaaaacataaaag 299
| | |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ct-gtctataataagtcgtttagcttagcctaattctggagacacattaaaacataaaag 499
Query: 300 tcaccgtggctaacatggatctgaatgaaattacttttcttattaggcccgcgttttcca 359
||||| ||||||||||||||| ||||||||||||||||||||||||| | ||||||||
Sbjct: 500 tcaccatggctaacatggatcagaatgaaattacttttcttattagggttgtgttttcca 559
Query: 360 atatttcaaagcctggtataaagttcaaatgtcaggataaaactcttgtctagtacactt 419
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 560 atatttcaaagcctggtataaagttcaaatgtcaggagaaaactcttgtctagtacactt 619
Query: 420 cattgtgtaacttttgtgggaggagtc-ttt---------tggcttggtttttttgggac 469
||||||||||||||||||||||||||| ||| ||| ||||||||||||||||
Sbjct: 620 cattgtgtaacttttgtgggaggagtcgtttggtttggtttggtttggtttttttgggac 679
Query: 470 agggtttctttgtgtatcctaaaactagctctgtagaccaggctgggctcaaactcatag 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agggtttctttgtgtatcctaaaactagctctgtagaccaggctgggctcaaactcatag 739
Query: 530 agatccacctgcctctgcctcttgagtac 558
|||||||||||||||| ||||||||||||
Sbjct: 740 agatccacctgcctctacctcttgagtac 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
