BAC Information

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BAC

Clone NameMSMg01-331L08
Chromosome13 (Build37)
Map Location 22,443,066 - 22,584,574
singlet/doubletdoublet
Overlap geneV1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4
Upstream geneZfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21
Downstream geneV1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331L08.T7 (MSMg01no331_l08.b1)MSMg01-331L08.TJ (MSMg01no331_l08.g1)
ACCAG447936AG447937
length775754
length of high quality
(start - end)		297 (71 - 367)456 (70 - 525)
definitionCHROMAT_FILE: MSMg01no331_l08.b1 PHD_FILE: MSMg01no331_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:39 2005CHROMAT_FILE: MSMg01no331_l08.g1 PHD_FILE: MSMg01no331_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,443,066 - 22,443,362)(22,584,255 - 22,584,574)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGAGGGGCGCGGAATTC
TCACAATTCCCCTGAAAGATACAGAACCATCTCCCCTACATTAGTGAGTC
TTAAAGGGTCCAAGTAAAACATTCAAAGCTAGGCATGTAGCACCTAGGAA
ATGCAGAACTGGCAGACAGAATTGCTGGTTGTAAAGCTTGGGCTTATTGA
TACTGCAGTTTAGCCTTCCTGAGTCTACTGACTACTCTCTCCCATACATC
TGGGTCTTGCATTGGAGTCCATGACCCATTCCTGGAAGAAAATAGCAGAT
TGATTAGGTTTGTTTTATTAAGATTTTATTTTTTTAATTGTTTCTGCTTT
TTTACAGACATGTTTTTTTGCTTTTGCTTTTTTTTTTTTTTTTTTTCCTG
AATAACAGTCCCGCCCATTCTAAAGCTTGCTTTGTAGATCAGGTTGGCCC
TGAACTCTCAAATCCCCCCACTGCCTCTGCATTCTGGGTGCTGGGATTAA
AGGTTTATGCCACCATGCTTGATTTGTTATTTGCTCTTGCTTACATGCCA
AGGAATAAGGCTTTAGAAAGGTTATTAAATGTATATATTCTTTACCTTGA
TAACTAAATATAAACGCATTATATGACTTATTTTGTTTAACCCGTCTTTT
TGTAACTACATGCCTATTCATTAATTAAGCTAAATTCTTCCAATTTTACC
TATACTTAACAATGTGTCGCGCCGTTTCCCTACGTAATATGGGTACACCT
AATGAAATGAAAAGGCTCTCTTCCA

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTAGACTACCATGATCAAACCACTATGAATT
TTGAAAAATTTTCCAAATCCATTTGTGTGCTTCCAGTCATGGTAGTAATA
AGACTAACCTTACAAATTGTAATTAAAGTCTATTTCTCAGGCCTAGAGTA
TTACCTCAGGCATTAAGAGCACTGACTGACTTTTAGAGGTCCAAGGTTCA
ATTCTTAGGACCCATATTTTGGTTCAGAACCATCTACTAACTCCAGTCAG
TAACAGGAAATTTGATGTTCTCTTCTATCATCCACAGGCCTCAAGCATGC
TACAAAGCCCTAAGTGCAGGTAAACTCTTCATAAACAATAAATTTTTACA
AATATAAAAAGTTGTCAAAGTCTCTTCGAAAGAGTGGCTTTAAGTAGCTA
TGATCTTTCTTAGCTTAAGTTACCAAGATTACGTGGCAATAAGTTACCAA
GATTATTCTCTAAGGCTGAATGCACAATTAAGCTGCAGTGTGGGACTTTT
TCTTACCCACACATTGTATATCTTAGAGTTCTTTCTCACTTATTGAAGAC
TTAGAAGAGAGAGACATTTTCTCAGTGTCTCCCACTGAACATGCTAAAGT
TAATTCAAAAACCCATGCCTGTGAATCAGCACTAGAGATTTAAAAATTTG
CTAACCAAGGTTTACAAATTCTTGAATATTTACCATCACCGAATAGCTCC
CTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_l08.b1 MSMg01no331_l08.b1 CHROMAT_FILE:
MSMg01no331_l08.b1 PHD_FILE: MSMg01no331_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:39 2005
         (297 letters)



>mm_chr13_22442866_22443562
          Length = 697

 Score =  543 bits (281), Expect = e-159
 Identities = 293/297 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagaaccatctcccctacattagtgagtcttaaagggtccaagtaaaacattcaaagct 60
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagaaccatcttcccgacattagtgagtcttaaagggtccaagtaaaacattcaaagct 260

                                                                       
Query: 61  aggcatgtagcacctaggaaatgcagaactggcagacagaattgctggttgtaaagcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcatgtagcacctaggaaatgcagaactggcagacagaattgctggttgtaaagcttg 320

                                                                       
Query: 121 ggcttattgatactgcagtttagccttcctgagtctactgactactctctcccatacatc 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtttattgatactgcagtttagccttcctgagtctactgactactctctcccatacatc 380

                                                                       
Query: 181 tgggtcttgcattggagtccatgacccattcctggaagaaaatagcagattgattaggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggtcttgcattggagtccatgacccattcctggaagaaaatagcagattgattaggtt 440

                                                                    
Query: 241 tgttttattaagattttatttttttaattgtttctgcttttttacagacatgttttt 297
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttttagtaagattttatttttttaattgtttctgcttttttacagacatgttttt 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no331_l08.g1 MSMg01no331_l08.g1 CHROMAT_FILE:
MSMg01no331_l08.g1 PHD_FILE: MSMg01no331_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:39 2005
         (456 letters)



>mm_chr13_22584255_22585110
          Length = 856

 Score =  596 bits (308), Expect = e-174
 Identities = 317/320 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagactaccatgatcaaaccactatgaattttgaaaaattttccaaatccatttgtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttagactaccatgatcaaaccactatgaattttgaaaaattttccaaatccatttgtgtg 261

                                                                       
Query: 61  cttccagtcatggtagtaataagactaaccttacaaattgtaattaaagtctatttctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cttccagtcatggtagtaataagactaaccttacaaattgtaattaaagtctatttctca 201

                                                                       
Query: 121 ggcctagagtattacctcaggcattaagagcactgactgacttttagaggtccaaggttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ggcctagagtattacctcaggcattaagagcactgactgacttttagaggtccaaggttc 141

                                                                       
Query: 181 aattcttaggacccatattttggttcagaaccatctactaactccagtcagtaacaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 140 aattcttaggacccatattttggttcagaaccatctactaactccagtcagcaacaggaa 81

                                                                       
Query: 241 atttgatgttctcttctatcatccacaggcctcaagcatgctacaaagccctaagtgcag 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 80  atttgatgttctcttctatcatccacaggccgcaagcatgctacaaagccccaagtgcag 21

                               
Query: 301 gtaaactcttcataaacaat 320
           ||||||||||||||||||||
Sbjct: 20  gtaaactcttcataaacaat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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