Query= MSMg01no332_d04.b1 MSMg01no332_d04.b1 CHROMAT_FILE:
MSMg01no332_d04.b1 PHD_FILE: MSMg01no332_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:24 2005
(501 letters)
>mm_chr13_45444052_45444954
Length = 903
Score = 696 bits (360), Expect = 0.0
Identities = 386/396 (97%), Gaps = 2/396 (0%)
Strand = Plus / Minus
Query: 1 aaacaccananactttttctagtataatgagtaagttaataatattgatatgattaaata 60
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aaacaccatatactttttctagtataatgagtaagttaataatattgatatgattaaata 337
Query: 61 tcagcattagataggactatgagtttaagcaatataatttaggctgtggttttattacgg 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tcagcattaaataggactatgagtttaagcaatataatttaggctgtggttttattacgg 277
Query: 121 caatttcacagtgttcaaccaaatacc--cttattctataaaatgaaaccacgtgaacat 178
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 276 caatttcacagtgttcaaccaaataccattttattctataaaatgaaaccacgtgaacat 217
Query: 179 ttagggtccacatcaccctctttcttttcttcctcctcttcctccctctcctccccccac 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ttagggtccacatcaccctctttcttttcttcctcctcttcctccctctcctccccccac 157
Query: 239 tttggaattccagtaagacagtctatatttattaggaggtattacaattataatctccag 298
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 156 tttggaattccagtaagacagtctatatttattaggaggcaacacaattataatctccag 97
Query: 299 gcttagctccatccatatcctttatttttattttttagtattttttttccttttttataa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 gcttagctccatccatatcctttatttttattttttagtattttttttccttttttataa 37
Query: 359 cctctagatctggattcaagttgagaacaggacaca 394
||||||||||||||||||||||||||| ||||||||
Sbjct: 36 cctctagatctggattcaagttgagaagaggacaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 903
Length adjustment: 10
Effective length of query: 491
Effective length of database: 893
Effective search space: 438463
Effective search space used: 438463
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_d04.g1 MSMg01no332_d04.g1 CHROMAT_FILE:
MSMg01no332_d04.g1 PHD_FILE: MSMg01no332_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:24 2005
(567 letters)
>mm_chr13_45279253_45280219
Length = 967
Score = 978 bits (506), Expect = 0.0
Identities = 550/568 (96%), Gaps = 8/568 (1%)
Strand = Plus / Plus
Query: 1 agacaaggagatgcttgggaaggggatgaggtgtcaggaagggtgtggagataaagtgtt 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 agacaaggagatgcttgggaaggggatgaggtgtcaggaagggtttggagataaagtgtt 260
Query: 61 ctgagtggccctggatggatgtaggaggaactggtccagggcttcctagacacatctcca 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgagtggtcctggatggatgtaggaggaactggtccagggcttcctagacacatctcca 320
Query: 121 tctccagcatctaagtgccctctgggctctcagatttgttaggggagctgtgtggatgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctccagcatctaagtgccctctgggctctcagatttgttaggggagctgtgtggatgtg 380
Query: 181 ctggcagctgttaggcaaagagaaaagacaggaaatactgacacacacacaaaccctatg 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggcagctgttaagcaaagagaaaagacaggaaatactgacacacacacaaaccctatg 440
Query: 241 gttgtgcaagctctttaaaaagtatttgtatgtttcatgt-tagtgtggctgcacatgtg 299
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 441 gttgtgcaagctctttaaaaagtatttgtatgtttcatgtgt-gtgtggctgcacat--- 496
Query: 300 catcctttatgtgtgagtgcgcacacacgtatgggagccagagatcaaccttctgtgtca 359
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 497 ---ccttaatgtgtgagtgcgcacacatgtatgggagccagagatcaaccttctgtgtca 553
Query: 360 ctgtttaggtaccatccaacctgttttctgtctcttttatccgataaacaccaattcagc 419
|||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||
Sbjct: 554 ctgtttaggtaccatccaaccttttttctgtctcttttatccaatgaacaccaattcagc 613
Query: 420 taggctggcaggaggtggagcccaggcacctgcaatgccacccagagctgggattataaa 479
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 614 taggctggcaggaggtggagcccaggcacctgcaatgccgcccagagctgggattataaa 673
Query: 480 caagccttcacacccgatattttatgtgggttctgggaccagaacttgtccagcgaatat 539
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 674 caagccttcacacccgatattttatgtaggttctgggaccagaacttgtccagcgaatat 733
Query: 540 ttcacctactgagccatctcacatgcac 567
||||||||||||||||||||||||||||
Sbjct: 734 ttcacctactgagccatctcacatgcac 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
