Query= MSMg01no332_i19.b1 MSMg01no332_i19.b1 CHROMAT_FILE:
MSMg01no332_i19.b1 PHD_FILE: MSMg01no332_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:06 2005
(644 letters)
>mm_chr13_55344474_55345517
Length = 1044
Score = 1191 bits (616), Expect = 0.0
Identities = 637/644 (98%)
Strand = Plus / Minus
Query: 1 aaactcaacacaaaacctgacacctcccctacaactatgcactgagaacagtggcaagaa 60
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 734 aaactcaacacaaaacctgacacctcccccactactatgcactgagaacagtggcaagaa 675
Query: 61 gcaatcaagctcttctagcctaacaactgcgtacattaggactgtgagaatacaacctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gcaatcaagctcttctagcctaacaactgcgtacattaggactgtgagaatacaacctta 615
Query: 121 taatacattattttgtaattctaaacattagaatagttataaagtacaagccgctatgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 taatacattattttgtaattctaaacattagaatagttataaagtacaagccgctatgct 555
Query: 181 aacttaagagattaagacaaaccccatgtacttgttataaatggcagttcaagtttgtca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aacttaagagattaagacaaaccccatgtacttgttataaatggcagttcaagtttgtca 495
Query: 241 gtaactctgaattatccaaataatgattaggaaaaaacagtataaaggtaggtacataca 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 494 gtaactctgaattatccaaataatgattaggaaaaaacagtataaaagtaggtacataca 435
Query: 301 ctgaggaaagcagcaatctaataactagtgccctttgtttttctaagagccttgttctgt 360
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 434 ctgaggaaagcagcaatctaagaactagtgccctttgtttttctaagagcgttgttctgt 375
Query: 361 tcgataaatctggctgaggcagaggatctcttaagtagagcggtttgtcctcaaacttaa 420
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tcgataaatatggctgagtcagaggatctcttaagtagagcggtttgtcctcaaacttaa 315
Query: 421 actgatactccagcctctgctatctagggactggaattctaagcactaacaaccacaccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 actgatactccagcctctgctatctagggactggaattctaagcactaacaaccacaccc 255
Query: 481 aggtcaaagaactattccttatacaatttactctgaaaactggggcaaggtgtttgtact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aggtcaaagaactattccttatacaatttactctgaaaactggggcaaggtgtttgtact 195
Query: 541 ggctggttttgtgtgtcaacttgacacaagctggagttatcacaaagaaaggagcctccc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ggctggttttgtgtgtcaacttgacacaagctggagttatcacaaagaaaggagcctccc 135
Query: 601 ttgaggaaatgtctccatgagatccagctgtaaggcattttccc 644
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 ttgaggaaatgtctccatgagatccagctgtaaggcattttccc 91
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_i19.g1 MSMg01no332_i19.g1 CHROMAT_FILE:
MSMg01no332_i19.g1 PHD_FILE: MSMg01no332_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:06 2005
(784 letters)
>mm_chr13_55187380_55188563
Length = 1184
Score = 719 bits (372), Expect = 0.0
Identities = 457/492 (92%), Gaps = 15/492 (3%)
Strand = Plus / Plus
Query: 169 aaaattaataatttttctatttcttctatatttccttttggttagtagaaacctgtgaat 228
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaagtaataatttttctatttcttctatatttccttttggttagtagaaacctgtgaat 428
Query: 229 tatcagtgataactaataatggtatgcataagacataagaaggtccttttcgcaattaaa 288
|| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 429 taccagtgataactaataatggtatgcataagacataagaaagtccttttctcaattaaa 488
Query: 289 aaaaggcatgcatctagaaccaattagaccata----tttttagaaatgtataatatact 344
||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 489 aaaaggcatgcatctagaaccaattagaccataagaat----agaaatgtataatatact 544
Query: 345 gacatgattaactatcatgttcacagaaacacataaaaactggccaatattcaaaacact 404
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gacatgattaactattatgttcacagaaacacataaaaactggccaatattcaaaacact 604
Query: 405 agtagacatccacccaagatcagaggcatttgattcagtaagtgtttgaatccaatatat 464
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 605 agtagacatccacccaagatcagaggcatttgattcagtaagtgtttgattccaatatat 664
Query: 465 tcatttattgtaaatcattctttggccattggttggttgatgaaagaaaaagtaaaagaa 524
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 665 tcatttattgtaaatcattctttggccactggttggttgatgaaagaaaaagtaaaagaa 724
Query: 525 ttctataaaatcgattttaaaaatctaacataccaaccttactcaacctcaaaacttaat 584
|||||||||||| ||||||||||||||| ||||||||| |||||||| ||||||||||||
Sbjct: 725 ttctataaaatcaattttaaaaatctaatataccaaccctactcaacttcaaaacttaat 784
Query: 585 aagtagcacttgagaggcagag-caggtgggt--ctccaagagtttgaagccatcctggt 641
|||||||||||| |||||| || |||| || | || ||||| || |||| ||||||
Sbjct: 785 aagtagcacttgggaggcacaggcaggcggatttct----gagttcgaggccagcctggt 840
Query: 642 ctatacagtgag 653
||| | ||||||
Sbjct: 841 ctacaaagtgag 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 784
Length of database: 1184
Length adjustment: 10
Effective length of query: 774
Effective length of database: 1174
Effective search space: 908676
Effective search space used: 908676
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
