Query= MSMg01no332_l05.b1 MSMg01no332_l05.b1 CHROMAT_FILE:
MSMg01no332_l05.b1 PHD_FILE: MSMg01no332_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:26 2005
(589 letters)
>mm_chr13_12304619_12305607
Length = 989
Score = 1040 bits (538), Expect = 0.0
Identities = 576/592 (97%), Gaps = 7/592 (1%)
Strand = Plus / Minus
Query: 1 gtaaaccactaaaaggcctctttgtaaagaacag---gtttttttgtttttgtttttgtt 57
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 989 gtaaaccactaaaaggcctctttgtaaagaacagtttttttttttgtttttgtttttgtt 930
Query: 58 ttctcgagacagggtttctttctctgtgtagccctggctgtcctggaactcactttgtag 117
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 929 ttctcgagacaggg----tttctctgtgtagccctggctgacctggaactcactttgtag 874
Query: 118 accaggctggcctcgaactcagaaatccgcctgcctctgcctccctagtgctgggattaa 177
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 873 accaggctggcctcgaactcagaaatccgcctgcctctgcctcccgagtgctgggattaa 814
Query: 178 aggtgtgcgccaccacgcccggctgtaaagcacagttttcagtgagttaaaaatcctcag 237
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 aggcgtgcgcaaccacgcccggctgtaaagcacagttttcagtgagttaaaaatcctcag 754
Query: 238 aatttatagaatgccaggatgaattgtattgaagtatgaaatttagaagatgaatagaat 297
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 753 aatttatagaatgccgggatgaattgtattgaagtatgaaacttagaagatgaatagaat 694
Query: 298 tcagagatggtaaaaggatgttaggcagaaaaaacaacaatctaccaagcagaaattcag 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tcagagatggtaaaaggatgttaggcagaaaaaacaacaatctaccaagcagaaattcag 634
Query: 358 aaacagaaattataacctttggtttctgtttggttttcctctgctgttgtcatttattgt 417
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 633 aaacagaaattataacctttggtttctgtttggttttcctctgctgctgtcatttattgt 574
Query: 418 cactccctaccttatccttatcctgctcactctagaaatctgggaaggtcaaatcagaca 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 cactccctaccttatccttatcctgctcactctagaaatctgggaaggtcaaatcagaca 514
Query: 478 ttcttaagttgtcctgaagcttcatgggtcagcatcggcagtcatgtgatagtttgctaa 537
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 513 ttcttaagttgtcctgaagcttcatgggtcagcatcggcagccatgtgatagtttgctaa 454
Query: 538 tgatgcccaactctgctttttcccaggttataaagtcagcccgtgtcatgaa 589
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tgatgcccaactctgctttttcccaggttataaagtcagcccgtgtcatgaa 402
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_l05.g1 MSMg01no332_l05.g1 CHROMAT_FILE:
MSMg01no332_l05.g1 PHD_FILE: MSMg01no332_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:26 2005
(426 letters)
>mm_chr13_12214531_12215356
Length = 826
Score = 764 bits (395), Expect = 0.0
Identities = 419/431 (97%), Gaps = 10/431 (2%)
Strand = Plus / Plus
Query: 1 gtcagcccttaaatggtatttactgaagcaacataaaacagactgagtagctatacttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gtcagcccttaaatggtatttactgaagcaacataaaacagactgagtagctatacttat 252
Query: 61 atatttgtatatgtatgcatatgtatgtgtatatatatata--tatatacatat------ 112
||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 253 atatttgtatatgtatgcatatgtatgtgtatatatatatacatatata-atatgtgtgt 311
Query: 113 ata-atgtgtgtatatatatatatatatatatatatatatatatatatatatatacatac 171
||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 312 atatatatgtgtatatatatatatatatatatatatatatatatatatatacatacatac 371
Query: 172 acacacacacaataataatcaaagaaaaagaggccctgaatttgagagagagtaaggatt 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 acacacacacaataataatcaaagaaaaagaggccctgaatttgagagagagtaaggatt 431
Query: 232 tggagatagaagatatgggaggagtcagagggaagaaaatgatcatgattgtatttttat 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tggagatagaagatatgggaggagtcagagggaagaaaatgatcatgattgtatttttat 491
Query: 292 ttaatttttttttaatccaggcagaaaaggaggacatgaagatgggaagagggtctgagg 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ttaatttttttttaatccaggcagaaaaggaggacatgaagatgggaagagggtctgagg 551
Query: 352 gaagagaccaggaaggagttggaggtagggagtggggagtagatttaatcaaaataaaat 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gaagagaccaggaaggagttggaggtagggagtggggagtagatttaatcaaaataaaat 611
Query: 412 gcattcgtgta 422
|||||||||||
Sbjct: 612 gcattcgtgta 622
Score = 89.7 bits (46), Expect = 3e-22
Identities = 55/58 (94%)
Strand = Plus / Minus
Query: 117 tgtgtgtatatatatatatatatatatatatatatatatatatatatatacatacaca 174
||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 376 tgtgtgtatgtatgtatatatatatatatatatatatatatatatatatatatacaca 319
Score = 81.9 bits (42), Expect = 7e-20
Identities = 51/54 (94%)
Strand = Plus / Minus
Query: 123 tatatatatatatatatatatatatatatatatatatatatatacatacacaca 176
|||||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 358 tatatatatatatatatatatatatatatatatatacacatatatatacacaca 305
Score = 78.1 bits (40), Expect = 1e-18
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 117 tgtgtgtatatatatatatatatatatatatatatatatatatatatatacatacacaca 176
||||||| ||| ||| |||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 378 tgtgtgtgtatgtatgtatatatatatatatatatatatatatatatatatatatacaca 319
Score = 66.5 bits (34), Expect = 3e-15
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 117 tgtgtgtatatatatatatatatatatatatatatatatatatatatata 166
||||||| | ||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 380 tgtgtgtgtgtatgtatgtatatatatatatatatatatatatatatata 331
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 6
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space: 340689
Effective search space used: 340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
