Query= MSMg01no332_p03.b1 MSMg01no332_p03.b1 CHROMAT_FILE:
MSMg01no332_p03.b1 PHD_FILE: MSMg01no332_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:56 2005
(517 letters)
>mm_chr13_45674880_45675799
Length = 920
Score = 919 bits (475), Expect = 0.0
Identities = 493/501 (98%), Gaps = 5/501 (0%)
Strand = Plus / Minus
Query: 1 atcttaatgggtcttactggcctctcacttatggacacgtcaggtcgcctttaaagttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atcttaatgggtcttactggcctctcacttatggacacgtcaggtcgcctttaaagttca 441
Query: 61 ggcagagagatgtggacactatgtttatgttggcaggggtgatggagatgttttacagtt 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 440 ggcagagagatgtggacactatgtttatgttggcaggggtgatggagatggtttacagtt 381
Query: 121 gtgtttaaagcttctgggatgtactcatgaggaattgtggggattaaaggaaacttggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtgtttaaagcttctgggatgtactcatgaggaattgtggggattaaaggaaacttggag 321
Query: 181 acagtttgagtcatggcttcccacttccagctgcccggtaggatcacctggtgtgtgctt 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 320 acagtttgagtcatggcttcccatttccagctgcccggtaggatcacctggtgtgtgctt 261
Query: 241 tgtagattccagtcattggctcgggggaggcgtgt----gggggggggcgcggtacagtt 296
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 260 tgtagattccagtcattggctcgggggaggcg-gtgggggggggggggcgcggtacagtt 202
Query: 297 gggctcagtcaatgaaatgcaaagatttgagtttgatccctaaaacccaaattaaaaagc 356
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 gggctcagtcaatgaaatgcaaagatttgagtttgatccctagaacccaaattaaaaagc 142
Query: 357 caagcattgcagtgcacactgccagaaatggggggaagtgggaggagggggctaggacag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 caagcattgcagtgcacactgccagaaatggggggaagtgggaggagggggctaggacag 82
Query: 417 gataatccctggggctcactggccagctgaccagcctacttggtgacttcgtggacagcc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 gataatccctggggctcactggccagctgaccagcctacttggtgacttcgtggacagcc 22
Query: 477 aaggtcccagtctttaaaatg 497
|||||||||||||||||||||
Sbjct: 21 aaggtcccagtctttaaaatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 920
Length adjustment: 10
Effective length of query: 507
Effective length of database: 910
Effective search space: 461370
Effective search space used: 461370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_p03.g1 MSMg01no332_p03.g1 CHROMAT_FILE:
MSMg01no332_p03.g1 PHD_FILE: MSMg01no332_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:57 2005
(755 letters)
>mm_chr13_45520813_45521967
Length = 1155
Score = 1348 bits (697), Expect = 0.0
Identities = 741/757 (97%), Gaps = 5/757 (0%)
Strand = Plus / Plus
Query: 1 ggttagggctttttacgtcgtatgggaaagaagg--tccaggctgttagcaacttgactt 58
||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||
Sbjct: 201 ggttagggctttttacgtcgtatgggaaaga--gcatccaggctgttagcgacttgactt 258
Query: 59 gagatgccttcagtaccagcggaatagctataacgtggattaattagttctggtctattg 118
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 259 gagatgccttcagtaccagcggaatagctataacgtggattaattagttctagtctattg 318
Query: 119 cgtcatcttctgctcacccacagctcctgcacattgcattgtagtgtgaaaaatatcatt 178
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cgtcatcctctgctcacccacagctcctgcacattgcattgtagtgtgaaaaatatcatt 378
Query: 179 ataaacagggtatggtggcacacgcctatagtcctagtcagtgcttggaaggtagaagcc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ataaacagggtatggtggcacacgcctatagtcctagtcagtgcttggaaggtagaagcc 438
Query: 239 aatcatgtgctctaaaaagtaatttccaggccagccagttacttcagatgagagtgtctc 298
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 439 aatcatgtgctctaaaaagtaatttccaggccagccagg-acttcagatgagagtgtctc 497
Query: 299 aaatagtaaaaccagaagacagggtatagcttagttggtcaagtgtttgccttgtgtgca 358
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 498 aaatagtaaaaccagaagacagggtatagcttagttggtcgagtgtttgccttgtgtgca 557
Query: 359 taaagacatgggctcaatccctaatgttgtacaaactggaatgctgctacatgcccataa 418
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 558 taaagacatgggctcaatccctaatgttgtacaaactggaatgctggtacatgcccataa 617
Query: 419 ccccagcactgcagaggtagaagccaggagggtcagaaactcaaagtcatcttcagctat 478
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 618 ccccagcactgcagaggtagaagccaggagggtcagaaactcaaggtcatcttcagctat 677
Query: 479 gaaatggctggctaatcttggtagctaacacgacatacttagagaaaaaggccctcactt 538
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ggaatggctggctaatcttggtagctaacacgacatacttagagaaaaaggccctcactt 737
Query: 539 aaagaatggcctccatcacgttggcctgttaggatggaactgtatgaaatagctagctga 598
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aaagaatgccctccatcacgttggcctgttaggatggaactgtatgaaatagctagctga 797
Query: 599 gcaagccagaggaagcaagccatcagcagtcctctgtatttgtacatcagttttggcctc 658
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 798 gcaagccagaggaagcaagccatcagcagtcctctgtatttgtacatcaattttggcctc 857
Query: 659 caggctcctgcccctggttccttcaatgatgaactataacctgtaagctaaaacaaacgc 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 858 caggctcctgcccctggttccttcaatgatgaactataacctgtaagctaaaacaaactc 917
Query: 719 ctcctttcccaggttgctctttgttgtgtgtttatca 755
|||||||||||||||||||||||||||||||||||||
Sbjct: 918 ctcctttcccaggttgctctttgttgtgtgtttatca 954
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 755
Length of database: 1155
Length adjustment: 10
Effective length of query: 745
Effective length of database: 1145
Effective search space: 853025
Effective search space used: 853025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
