Query= MSMg01no333_l20.b1 MSMg01no333_l20.b1 CHROMAT_FILE:
MSMg01no333_l20.b1 PHD_FILE: MSMg01no333_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:59 2005
(642 letters)
>mm_chr13_17127552_17128592
Length = 1041
Score = 1096 bits (567), Expect = 0.0
Identities = 617/641 (96%), Gaps = 16/641 (2%)
Strand = Plus / Plus
Query: 1 taagtaaaaagaaaaaaaagcatgcatatctattgggtggtgtaatatgttcttacttca 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 201 taagtaaaaagaaaaaaaagcatgcatatctattgg-tggtgtaatatgttcttactaca 259
Query: 61 cttgtgataattacacaaatccgcatgtgacaaaataggagaagaacacacacacacaca 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 260 cttgtgataattacacaaatccgcatatgacaaaataggagaagaacacacacacacaca 319
Query: 121 cacacacacacacacacacacacacacacacagggcaccaactgtctatcagtttcctga 180
|||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 320 cacacacacacacacacacaga----------gggcaccaactgtctatcagtttcctga 369
Query: 181 ctgggaaaccgtgctatgattatatagtgtataaaagagaaacttggtgaagggtacaca 240
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 370 ctgggaaaccgtgctatgattatatagtgtataacagagaaatttggtgaagggtacaca 429
Query: 241 ggacttctctgaatgagttttggaatttgctgtgaccctataattatcacaaaaatagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ggacttctctgaatgagttttggaatttgctgtgaccctataattatcacaaaaatagaa 489
Query: 301 tggaaaatacaatataataaaagtataggaaatatataataaaatgaaatatgatagttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tggaaaatacaatataataaaagtataggaaatatataataaaatgaaatatgatagttt 549
Query: 361 aaattattttggagcaaggaagaattcttctctgaatgttctgaatggacacatttctga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 aaattattttggagcaaggaagaattcttctctgaatgttctgaatggacacatttctga 609
Query: 421 --gctcccaaaaccaaaaaaactaaaaaccaagatattagcattttcagcatgtctgaca 478
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 610 atgc--ccaaaaccaaaaaa-ctaaaaaccaagatattagcattttcagcatgtctgaca 666
Query: 479 aatgaggcctggaggttttactataatatcacttacattgcagctgaatatgtgtactca 538
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 667 aatgaggcctggaggttttactataatatcacttacattacagctgaatatgtgtactca 726
Query: 539 gagatgtaggctgagatataatgtggtatcctatgttgagtggggctacccatgtccctg 598
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 727 gagatgtaggctgagatataatgtggtatcctatgttgagtggggctgcccatgtccctg 786
Query: 599 gacagcagagggtccatgcctatctatgtttatgtctatgg 639
|||||| ||||||||||||||||||||||||||||||||||
Sbjct: 787 gacagcggagggtccatgcctatctatgtttatgtctatgg 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1041
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1031
Effective search space: 651592
Effective search space used: 651592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_l20.g1 MSMg01no333_l20.g1 CHROMAT_FILE:
MSMg01no333_l20.g1 PHD_FILE: MSMg01no333_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:59 2005
(605 letters)
>mm_chr13_17286500_17287504
Length = 1005
Score = 1116 bits (577), Expect = 0.0
Identities = 598/605 (98%)
Strand = Plus / Minus
Query: 1 cagcttatttcagaactcaaagtatccatttttcttctgttactggccatttgtcatcct 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 805 cagcttatttcagaactcaaagcatccatttttcttctgttactggccatttgtcatcct 746
Query: 61 ttcaacttccatttgttttggggtccacattttgtgtctttttgtaaaagttttatagta 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 745 ttcaacttccatttgttttggggtctacattttgtgtctttttgtaaaagttttatagta 686
Query: 121 gttgctacagtgagcacaaaactgagcaaaaaatatagcccctatgttaaaggaatttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gttgctacagtgagcacaaaactgagcaaaaaatatagcccctatgttaaaggaatttat 626
Query: 181 actcttggtgagagtaaagagaagtgatgtgtttaattaaaaaaattcttgaagctatat 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 625 actcttggtgagagtaaagagaagcgatgtgtttaattaaaaaaattcttgaagctatat 566
Query: 241 aaactaaatgactaagaaatagagccatgaaacctaaatatactggcaagcaggcacgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaactaaatgactaagaaatagagccatgaaacctaaatatactggcaagcaggcacgaa 506
Query: 301 tgaaaacaagaatgagaagtcactaaagggacaccaagaaaagtgtcaactgctcaatag 360
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 505 tgaaaacaagaatgagaagtcactaaagggacaccaagaaaagtgtcaattgttcaatag 446
Query: 361 ctaggtgtagccaagtagcagcagagctgtgatgacccgtgggccgcctgatctgttgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctaggtgtagccaagtagcagcagagctgtgatgacccgtgggccgcctgatctgttgct 386
Query: 421 gctgttctatgggaagctgtagtgctatggaagcgatggaatcagtaaatggatttgttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctgttctatgggaagctgtagtgctatggaagcgatggaatcagtaaatggatttgttt 326
Query: 481 ccatcaactatgactctgctctttggaataattcccaataatactttccggaaggtactt 540
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 ccatcaactacgactctgctctttggaataattcccaataatattttccggaaggtactt 266
Query: 541 aaggatcatgtttaaaactattcatttcttgttgctagaaacttactattctaagagcag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaggatcatgtttaaaactattcatttcttgttgctagaaacttactattctaagagcag 206
Query: 601 gaaga 605
|||||
Sbjct: 205 gaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
