BAC Information

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BAC

Clone NameMSMg01-334F23
Chromosome13 (Build37)
Map Location 24,772,037 - 24,772,561
singlet/doubletsinglet
Overlap gene6330500D04Rik
Upstream geneHist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik
Downstream geneLOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334F23.T7 (MSMg01no334_f23.b1)MSMg01-334F23.TJ (MSMg01no334_f23.g1)
ACCAG449885AG449886
length700716
length of high quality
(start - end)		525 (119 - 643)608 (75 - 682)
definitionCHROMAT_FILE: MSMg01no334_f23.b1 PHD_FILE: MSMg01no334_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:46 2005CHROMAT_FILE: MSMg01no334_f23.g1 PHD_FILE: MSMg01no334_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCGATCCGCGGAATTCTCTAA
GTAGTTTCCGCTAAAAGGCACAAGCCCCAGAAGGCGACATCTCTGCCTTC
CTTCCACTGAGATTGCCAGCACATACCACCAAGCCTGATTACTGTTTTCT
TAATTGTTTTTAATTTAGCAAGTAAAAGATACATATGAATGCATAGTATA
TAACATGATATTATGAAACAGGCACACACTAGAGAGTAGCTGACCCAGCA
TGTTTAACCTGGAGCGTGGATCTCTTCCTATTTAGTGTGCATGGCTGATT
CTCTGTCACAATGCCTTTTTGTACAGTCCCGAGTCTGTTCTTAGAACATC
CACACTCTAGAGATGTCTGACTACTTTGATATCATCTAACTTGTCCACCT
AAGCCCCAGCTATCCCATGCACCGGGAGCGGTGTGTCGTGCTGCCTGTCC
TGCAGCGGGTACTGTGTACTCATGGAAGACAGGAACATGCCTCTCGTTCA
ATGTTATCATTGCCGAGACGCCTTGTGCCACCGTGCAGAGGAATGCAGAT
CTGACATCATTTCCTATGCTCTTTGCAGAACATGTGTGCCATTGAAGCGG
AGTTGGAGAGTCTGCTGGGAGAATTCTCCATCAAGATGAAAGGTAATCTG
TCCTTGTTCAGAGAGGGATAAAGGTGCCATGTCGTCCACAGAGCTTCATG


CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGCCGNAATACAGGGCAACGTGGTCTACACAGCAAGTT
TCAGGATAGCCAGAGCTACATAATGCGAGAGACTATGTCTCAAAACAAAC
AAACAAACAAACACAGTGCAAAGTCCTTTGTGAAGGACAGACATACCCAG
TCATACACAGACACAGATTCACAAAACAGCCTTCAGTCTGGCACAAATCC
ATCCAGACAGACAGAAGTCAGAAGACACAGGGAGCCCTAAAGTAGAGAAT
TCAATGGTTCTCTTAGTTAAATGACACCAAGGGTAAGTTCTTTACTATTG
GTGACTTGGAGTTTATTATTCATGCCTTTAGTTCATGCAGACATAAATCC
TACAACCTTAAAGAACTGAACTATGCAGCCACCAGAAACAGCTTGCACAC
AAATTCTTCCCCAGAGCTTATGGCTCAGCGGATAAAAGCATTGACTGCTC
TTCCAAAGGTCCTGAGTTCAAATCCACACGGGGGCTCACAACCACCCATA
ATGAGATTCTGACACCCTCTTCTGGTGTCTGAAGACAGCTAAGTGCACTT
ATTTAAAAAAAAAAAAAAAGAACGTAAGTTGTAAGTTGTTAAGTAATTGG
TCCAGGCTGAAACATTCCCCCGCTGAAGGAAGAACGATTCCTCANGCCCA
TGAAACTTACAAGGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_f23.b1 MSMg01no334_f23.b1 CHROMAT_FILE:
MSMg01no334_f23.b1 PHD_FILE: MSMg01no334_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:46 2005
         (525 letters)



>mm_chr13_24771837_24772761
          Length = 925

 Score =  992 bits (513), Expect = 0.0
 Identities = 522/525 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcacataccaccaagcctgattactgttttcttaattgtttttaatttagcaagtaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcacataccaccaagcctgattactgttttcttaattgtttttaatttagcaagtaaaag 260

                                                                       
Query: 61  atacatatgaatgcatagtatataacatgatattatgaaacaggcacacactagagagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacatatgaatgcatagtatataacatgatattatgaaacaggcacacactagagagta 320

                                                                       
Query: 121 gctgacccagcatgtttaacctggagcgtggatctcttcctatttagtgtgcatggctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgacccagcatgtttaacctggagcgtggatctcttcctatttagtgtgcatggctga 380

                                                                       
Query: 181 ttctctgtcacaatgcctttttgtacagtcccgagtctgttcttagaacatccacactct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctctgtcacaatgcctttttgtacagtcccgagtctgttcttagaacatccacactct 440

                                                                       
Query: 241 agagatgtctgactactttgatatcatctaacttgtccacctaagccccagctatcccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagatgtctgactactttgatatcatctaacttgtccacctaagccccagctatcccat 500

                                                                       
Query: 301 gcaccgggagcggtgtgtcgtgctgcctgtcctgcagcgggtactgtgtactcatggaag 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 gcacccggagcggtgtgtcgtgctgcctgtcctgcagcgggtactgtgtactcgtggaag 560

                                                                       
Query: 361 acaggaacatgcctctcgttcaatgttatcattgccgagacgccttgtgccaccgtgcag 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 acaggaacatgcctctcgttcaatgttatcattgccgagacgtcttgtgccaccgtgcag 620

                                                                       
Query: 421 aggaatgcagatctgacatcatttcctatgctctttgcagaacatgtgtgccattgaagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggaatgcagatctgacatcatttcctatgctctttgcagaacatgtgtgccattgaagc 680

                                                        
Query: 481 ggagttggagagtctgctgggagaattctccatcaagatgaaagg 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggagttggagagtctgctgggagaattctccatcaagatgaaagg 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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