Query= MSMg01no334_j04.b1 MSMg01no334_j04.b1 CHROMAT_FILE:
MSMg01no334_j04.b1 PHD_FILE: MSMg01no334_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:03 2005
(406 letters)
>mm_chr13_74889327_74890132
Length = 806
Score = 725 bits (375), Expect = 0.0
Identities = 396/403 (98%), Gaps = 2/403 (0%)
Strand = Plus / Plus
Query: 5 gaattcctagtatta-ctttatgtggtcacatcaggaacaggaaactaaatagacaacat 63
|||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctagtagtaactt-atgtggtcacatcaggaacaggaaactaaatagacaacat 263
Query: 64 aatgacatggaagatagaaaacaaacaaaagctgccaagtgtagataaagcaatttgata 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatgacatggaagatagaaaacaaacaaaagctgccaagtgtagataaagcaatttgata 323
Query: 124 ataatggagccaggacctcttaacacagtgagatactgcaatacacaaacaaacaagatg 183
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 324 ataatggagccaggacctcttaacacagtcaaatactgcaatacacaaacaaacaagatg 383
Query: 184 agaaaaatttgcgaatgcctcctctttaatttcaaccctgaaatgtgtctaagaaacagc 243
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 384 agaaaaatttgcgaatgcctcctctgtaatttcaaccctgaaatgtgtctaagaaacagc 443
Query: 244 ttgagttgcagtaactaagggagagatgttaaggcatctttagtcatctgtcagaactag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgagttgcagtaactaagggagagatgttaaggcatctttagtcatctgtcagaactag 503
Query: 304 gcttactctatgtagcaactacatgccttttattctcctgaaattgcaaggaatataaga 363
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 504 gcttactctatgtagcaactacatgccttttattctcctgaaattccaaggaatataaga 563
Query: 364 ttaagtacccaacagaggtcaaaggaatttttcaatgagatgg 406
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttaagtacccaacagaggtcaaaggaatttttcaatgagatgg 606
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space: 316409
Effective search space used: 316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_j04.g1 MSMg01no334_j04.g1 CHROMAT_FILE:
MSMg01no334_j04.g1 PHD_FILE: MSMg01no334_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:03 2005
(235 letters)
>mm_chr13_75105866_75106500
Length = 635
Score = 447 bits (231), Expect = e-130
Identities = 234/235 (99%)
Strand = Plus / Minus
Query: 1 cataaacagagaatcatcatgattctgctagcatatttcaacccacacaggaactagctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cataaacagagaatcatcatgattctgctagcatatttcaacccacacaggaactagctt 307
Query: 61 gaaatgtcatatgatagctgtgtttgaacagattttgttcataagcagatatcaaatctt 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 306 gaaatgtcatatgatagctgtgtttgaacagaatttgttcataagcagatatcaaatctt 247
Query: 121 cagtcatattccaccaagaatacattgtgcttagaatatgtctttgttattaattaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cagtcatattccaccaagaatacattgtgcttagaatatgtctttgttattaattaaata 187
Query: 181 tctaatttttctttcttttaaatttattttatttactatttatacattcacaagt 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tctaatttttctttcttttaaatttattttatttactatttatacattcacaagt 132
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space: 141476
Effective search space used: 141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
