Query= MSMg01no335_h23.b1 MSMg01no335_h23.b1 CHROMAT_FILE:
MSMg01no335_h23.b1 PHD_FILE: MSMg01no335_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:16 2005
(490 letters)
>mm_chr13_21327384_21328273
Length = 890
Score = 909 bits (470), Expect = 0.0
Identities = 485/490 (98%)
Strand = Plus / Plus
Query: 1 taaatgccagagagggaccttggcgattcaagaaggctgctcctcctcctcttgttgtag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaatgccagagagggaccttggcgattcaagaaggctgctcctcctcctcttgttgtag 260
Query: 61 tctgccaaatggttgtgaacaaagagacaagaagttggagatatcctgacatgaagattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgccaaatggttgtgaacaaagagacaagaagttggagatatcctgacatgaagattg 320
Query: 121 gacttgcctcaaggaaccccaatgactctaattagcaggaagtagtctaaagaggtctac 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacttgcctcaaggaactccaatgactctaattagcaggaagtagtctaaagaggtctac 380
Query: 181 acccactttttcctctaactttcctcttctacctagtgttgggaggttggaaggaattag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acccactttttcctctaactttcctcttctacctagtgttgggaggttggaaggaattag 440
Query: 241 ggtagaataatgtatggaagggtggtaggtataagaacccaataaaatagatttaaaaat 300
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtagaataaggcatggaagggtggtaggtataagaacccaataaaatagatttaaaaat 500
Query: 301 agggcccacaggtctgcctgaggataatacataccattgtgcccagctgaattttgatcc 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 agggcccacaggtctgcctgaggataatacataccattgtgcccaactgaattttgatcc 560
Query: 361 caatgagacacagttacccagttctgtttattttaagactatccttcaacagcctcatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caatgagacacagttacccagttctgtttattttaagactatccttcaacagcctcatct 620
Query: 421 tttttgttttgctttttccaggagaaatgagaggttgggaagtttttgtaatttcagtta 480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 tttttgttttgctttttccaggagaaatgagaggttgagaagtttttgtaatttcagtta 680
Query: 481 acagtttgtt 490
||||||||||
Sbjct: 681 acagtttgtt 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_h23.g1 MSMg01no335_h23.g1 CHROMAT_FILE:
MSMg01no335_h23.g1 PHD_FILE: MSMg01no335_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:16 2005
(460 letters)
>mm_chr13_21527231_21528090
Length = 860
Score = 675 bits (349), Expect = 0.0
Identities = 355/357 (99%), Gaps = 1/357 (0%)
Strand = Plus / Minus
Query: 104 agcacctgggagtggagcttcttcagggtattgtgggactggctgcagagtttgtgccca 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 agcacctgggagtggagcttcttcagggtattgtgggactggctgcagagtttgtgccca 801
Query: 164 accaaggtctactcagagcaccggcccagaccagaagaaacctgtgccactggtcgcgca 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 accaaggtctactcagagcaccggcccagaccagaagaaacctgtgccactggtcgcgca 741
Query: 224 gagttcttggatgcctgggtcccactgatctccagttactcccggtgttggggcagttgt 283
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 740 gagttcttggatgcctgggtcccactgatc-ccagttactcccagtgttggggcagttgt 682
Query: 284 cttcctcacctctaatcctattcatctaaaagatttttggagttacaagcaagacaacag 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttcctcacctctaatcctattcatctaaaagatttttggagttacaagcaagacaacag 622
Query: 344 taaataccaaatgtacaggagatttgttagagtaagagcaaaattgtgctttaggaaata 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaataccaaatgtacaggagatttgttagagtaagagcaaaattgtgctttaggaaata 562
Query: 404 cacatcaatgatgtgatgtacaaaacaaaactattgcaatagtggatgaaaatggta 460
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacatcaatgatgtgatgtacaaaacaaaactattgcaatagtggatgaaaatggta 505
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space: 382500
Effective search space used: 382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
