TTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATTTTCTTATCCTTCATTGACTTATTTCATTCACCTCTTATTT
CTATGCTCCTTTTTAATGCAATCAGAAGGTTGTTCAGGCCCTCTTTCATT
TTTGAACTATTGTCATTGTTTTAGATTTCCAATCTAGAATTTGTCTGAGT
CTCTTTCATTCTGGGCCTTTACTCTGAGGTTGATAACTGTTGGATGAGAT
GTTGTGTTAACTTTTCATGTTACTTGTCTTTTTATCCTGGGCTTTATGCA
CCAGGAGTAAGATCATTGATTTCCTCCCTTCCTACCTTCCAGTTAGTATC
TGTAAGGGTCAGTAAGAATAGTTTCTGCAGTAGTTGTCATTAACTACTTA
GAGTACACCCCCTGTGAAGACAGAATAATAGTTAAGTATATAGCAATCAC
TCCTTAACTGCTAATCATTCTGTGGAGCAAAGTGATATCACTAGTACTTA
GTGAACTGGTATAGTAGTTACCGTGCATATTAATAGAAAGAAATAAGAAA
TGGGAGACTAGTAATTAGCATTGGGGGGATAGAGATAAAAGAGGGTCATG
TTCATAATAAGGGAGCTATACTAGTAGGAAGTGTTAGAGGAATGATTCAG
CTTTGTCTGAAGGAAAACTAATGTGCCACTGGTATATAGAAACATCCAGA
TTTTCTTTTGGGTTCCTAAAAAAGAATTTCTATATGTAACAGCCTTGCCT
A

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTT
TTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATA
TATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTT
CCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTG
CAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTTGATCTTAC
AGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATAT
CTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGT
TTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGA
TAAGTATGAATCGATTCGCATTCTTCTACATGATAACAACCAGTTGTGCC
AGCACCATAACAACCAGTTGTGCCAGCACCATATCCTTTCTTAAAAATCT
TTTGATTTTCTATTAATGACAGGATAAAGATCCAGCCTCTTAATTTGACC
ACATATAAACCCTGTGGGGTTCTCCATTTTTTCTTTTCCCTTTTGAAAGA
AAAAACCTCGTTGTATTTAGCTTGGCCCCCCATCTCTCCCCTAAACTTTG
CCTGGTCTTTGGAATCTCCCCAATACTGGGGCATTTATATGGGTCTTCAC
TCCCCCCAATACTCCTTATAGGCGCTTTT

Query= MSMg01no337_i05.b1 MSMg01no337_i05.b1 CHROMAT_FILE:
MSMg01no337_i05.b1 PHD_FILE: MSMg01no337_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:55 2005
         (581 letters)



>mm_chr13_17876645_17877626
          Length = 982

 Score = 1087 bits (562), Expect = 0.0
 Identities = 574/578 (99%), Gaps = 1/578 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctattttcttatccttcattgacttatttcattcacctcttatttctatgctcct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 gaattctattttcttatccttcattgacttatttcattcacctcttatttctatgctcct 723

                                                                       
Query: 65  ttttaatgcaatcagaaggttgttcaggccctctttcatttttgaac-tattgtcattgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 722 ttttaatgcaatcagaaggttgttcaggccctctttcatttttgaacatattgtcattgt 663

                                                                       
Query: 124 tttagatttccaatctagaatttgtctgagtctctttcattctgggcctttactctgagg 183
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tttagattcccaatctagaatttgtctgagtctctttcattctgggcctttactctgagg 603

                                                                       
Query: 184 ttgataactgttggatgagatgttgtgttaacttttcatgttacttgtctttttatcctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ttgataactgttggatgagatgttgtgttaacttttcatgttacttgtctttttatcctg 543

                                                                       
Query: 244 ggctttatgcaccaggagtaagatcattgatttcctcccttcctaccttccagttagtat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ggctttatgcaccaggagtaagatcattgatttcctcccttcctaccttccagttagtat 483

                                                                       
Query: 304 ctgtaagggtcagtaagaatagtttctgcagtagttgtcattaactacttagagtacacc 363
           ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 482 ctgtaagggtcagtaagaatactttccgcagtagttgtcattaactacttagagtacacc 423

                                                                       
Query: 364 ccctgtgaagacagaataatagttaagtatatagcaatcactccttaactgctaatcatt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ccctgtgaagacagaataatagttaagtatatagcaatcactccttaactgctaatcatt 363

                                                                       
Query: 424 ctgtggagcaaagtgatatcactagtacttagtgaactggtatagtagttaccgtgcata 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ctgtggagcaaagtgatatcactagtacttagtgaactggtatagtagttaccgtgcata 303

                                                                       
Query: 484 ttaatagaaagaaataagaaatgggagactagtaattagcattggggggatagagataaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ttaatagaaagaaataagaaatgggagactagtaattagcattggggggatagagataaa 243

                                                 
Query: 544 agagggtcatgttcataataagggagctatactagtag 581
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agagggtcatgttcataataagggagctatactagtag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 982
Length adjustment: 10
Effective length of query: 571
Effective length of database: 972
Effective search space:   555012
Effective search space used:   555012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)