BAC Information

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BAC

Clone NameMSMg01-338P12
Chromosome13 (Build37)
Map Location 22,092,390 - 22,092,982
singlet/doubletsinglet
Overlap genenone
Upstream geneAoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24
Downstream genePrss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338P12.T7 (MSMg01no338_p12.b1)MSMg01-338P12.TJ (MSMg01no338_p12.g1)
ACCAG453371AG453372
length747785
length of high quality
(start - end)
591 (65 - 655)92 (68 - 159)
definitionCHROMAT_FILE: MSMg01no338_p12.b1 PHD_FILE: MSMg01no338_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:43 2005CHROMAT_FILE: MSMg01no338_p12.g1 PHD_FILE: MSMg01no338_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTTCGAGAGGAGGCGCGGAATTCCA
GGTGTTTCCTAGACATGTCCTTATAGGAAGAGGGGAAATTAAACCTGTAA
GTTGGCCACCAGGCTAGTGTCTACTTAAACAGTGGTGGAGGTGGGAGTTG
TAAGGCTATGTGCCTCTGGGCATGCAGGCCAGATCAGGGAGGGAGTAATT
CTTACTCCTGCCAGTCTCAAGATGAGATGTCCAGGGTGACATGTCTGGAC
CTCACTCTTACTGGTTTAAAAAAGCTTAAAAAAAATAAAAAATCTCAAGC
ACAGCCTCCCTCTTTTCTTTTACCTGTTCCTAGAGGCAAGTCTCCCAGAC
TTGCAAAACCAATAATTTAATGAAACCACATCAACTGAAAGAGGACGACT
GTAGAGGAGAAGGGAGACCAATGAAAGGAGGAGGTCAAAGGACAGTGGGG
AAGGAGGGTGAGCAAGAGCAACATGTATCTTATTTTATCAGAACAGAGAA
ATTTTGTTATTATTTTTCTTTTGCCTTTATGTTTTAATCTCAGATATACA
ATTAAAATAAATGCATTAAGTGAGCACTACAGGGGTTTTTTATGAAGGCT
CACTTCTGGGTTAGATGAAGCCCAGATGATTGTAAATGCTCTATTTGCAC
TTACATATGTAAGACTGGCAGAGATAACAAAAAAAAAAGGACCAGGAGGA
ACACAGCATGACATCTGCCTTGTCAGTCAGACACAGAACACGTCTCA
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGTGAAACTAGGTGTTCCTCAATGTAATGATTC
TTAAACAATTAAAAATGGAAGCATAGGGTACAGCACAGCACAGCACAGCA
CAGTCCTAATGGCCCTGNTACATGCTGTGTGCTCTCATCTCGGAAAAATG
TAACAACTGCACATGGGTATTTCAAATTAATGCTTGACTTGCAAAAAATT
TTGAAAAATTTTTAAAATNACNNNCATGCAANNCAATAATAATAAATTGT
ATATGTTTATTAAGCACTAANNNTATATTACTAACNNNNNNTTGATNNTC
CNNNNNNNNNNTTATAAAAATTGCCCTCANTGTGGGGTCGGGGAGGGGGG
GGGGGGGGGGGGGGGGGGGGGAAACAAAAAATTTGCGNNATATGTGATTT
TTCTNNNNNNNNTTTNNNNNNNNNNTCAACACCNNTTAAAGAAAAAAAAG
ATACGGGGGGGGGGGGGGGGGGGGGGGGTCNNNNNNNNNNNNNNNNCCCC
CNNNNNNNNNNNNNNCTTCTATTGTTTATTGAGGANNNNNNNNTNNNNNC
NCTNNNNNNNTNNNNTTTTTAANAAATNTTTTTACTTTTNNNNCNNNNNC
NNNNNNTTTATATATAAAACAAATATAATTTTTTTTTCTTCCCCCCCTCC
TTTTTNCACACTTCTTCCTTATCTCTCCTTCCTCTCCCCTCCTCTCATCC
TATCTTCTTTTTTCTCTACTATTAATCTTTTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_p12.b1 MSMg01no338_p12.b1 CHROMAT_FILE:
MSMg01no338_p12.b1 PHD_FILE: MSMg01no338_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:43 2005
         (591 letters)



>mm_chr13_22092366_22093357
          Length = 992

 Score = 1093 bits (565), Expect = 0.0
 Identities = 586/597 (98%), Gaps = 10/597 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtccttataggaagaggggaaattaaacctgtaagttggccaccaggctagtgtctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 atgtccttataggaagaggggaaattaaacctgtaagttggccaccaggctagtgtctac 558

                                                                       
Query: 61  ttaaacagtggtggaggtgggagttgtaaggctatgtgcctctgggcatgcaggccagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttaaacagtggtggaggtgggagttgtaaggctatgtgcctctgggcatgcaggccagat 498

                                                                       
Query: 121 cagggagggagtaattcttactcctgccagtctcaagatgagatgtccagggtgacatgt 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 497 cagggagggagtaattcttactcctgccagtctcgagatgagatgtccagggtgacatgt 438

                                                                       
Query: 181 ctggacctcactcttactggtttaaaaaagctt--aaaaaaaataaaaaatctcaagcac 238
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 437 ctggacctcactcttactggtttaaaaaagctttaaaaaaaaataaaaaatctcaagcac 378

                                                                       
Query: 239 agcctccctcttttc---ttttacctgttcctagaggcaagtctcccagacttgcaaaac 295
           |||||||||||||||       ||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agcctccctcttttccca----acctgttcctagaggcaagtctcccagacttgcaaaac 322

                                                                       
Query: 296 caataatttaatgaaaccacatcaactgaaagaggacgactgtagaggagaagggagacc 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caataatttaatgaaaccacatcaactgaaagaggacgactgtagaggagaagggagacc 262

                                                                       
Query: 356 aatgaaaggaggaggtcaaaggacagtggggaaggagggtgagcaagagcaacatgtatc 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgaaaggaggaggtcaaaggacagtggggaaggagggtgagcaagagcaacatgtatc 202

                                                                       
Query: 416 ttattttatcagaacagagaaattttgttattatttttcttttgcctttatgttttaatc 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttattttatcagaacagagaaattttgttattatttttcttttgcctttatgttttaatc 142

                                                                       
Query: 476 tcagatatacaattaaaataaatgcattaagtgagcactacagggg-ttttttatgaagg 534
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 141 tcagatatacaattaaaataaatgcattaagtgagcactacaggggtttttttatgaagg 82

                                                                    
Query: 535 ctcacttctgggttagatgaagcccagatgattgtaaatgctctatttgcacttaca 591
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  ctcacttctgggttagatgaagcccagatgattgtaaatgctctatttgcacttaca 25


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 992
Length adjustment: 10
Effective length of query: 581
Effective length of database: 982
Effective search space:   570542
Effective search space used:   570542
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)