Query= MSMg01no339_a11.b1 MSMg01no339_a11.b1 CHROMAT_FILE:
MSMg01no339_a11.b1 PHD_FILE: MSMg01no339_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:47 2005
(517 letters)
>mm_chr13_47900192_47901108
Length = 917
Score = 733 bits (379), Expect = 0.0
Identities = 459/513 (89%), Gaps = 43/513 (8%)
Strand = Plus / Minus
Query: 5 tattttacccactgaaccaactcccactccttaaagttacaaacttttggttgtgaaaga 64
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 917 tattttacccactgaaccaactcccattccttaaagttacaaacttttggttgtgaaaga 858
Query: 65 ttctgttgagagaatgaaacatcaaggcacatagtaggacacattttgcttcaaaatttc 124
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 857 ttctgttgagagaatgaaacatcaaggcacacagtaggacacattttgcttcaaaatttc 798
Query: 125 ttctctcagctttctctcctcgactgtgaagatggtgacaaagcctcttctaatggtttt 184
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 797 ttctctcagctttctctcctcgactgtgaagatggtgataaagcctctt-taatggtttt 739
Query: 185 ctgtaataataacaacaacaacaacaacaacaacaataataataataataataataataa 244
||| |||||||||||||||
Sbjct: 738 ctg------------------------------------------taataataataataa 721
Query: 245 tatctctgtttcataaacagatccacactttaggagagcagctgggaactgggtccctcc 304
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 aagctctgtttcataaacagatccacactttaggagagcagctgggaactgggtccctcc 661
Query: 305 ctttgtagtttgagggtgccttctctttaaacacaagaggcagaagagggagccacactc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ctttgtagtttgagggtgccttctctttaaacacaagaggcagaagagggagccacactc 601
Query: 365 ttgcttcacaagcaaatggtgtgttcaagtcagtaggcattctttataactctagagtcc 424
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 600 ttgcttcacaagcaaatggtgtgttcgagttagtaggcattctttataactctagagtcc 541
Query: 425 taacaagtctgttcgttcactctggggctgaagttgcatcatgaagtcatggagaaatga 484
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 540 taacaagtctgttcgttcactccgatgctgaagttgcatcatgaagtcatggagaaatga 481
Query: 485 tttttcatggttattggggaagcattctgaaga 517
||||||| |||||||||||||||||||||||||
Sbjct: 480 tttttcacggttattggggaagcattctgaaga 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_a11.g1 MSMg01no339_a11.g1 CHROMAT_FILE:
MSMg01no339_a11.g1 PHD_FILE: MSMg01no339_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:47 2005
(357 letters)
>mm_chr13_47736342_47737101
Length = 760
Score = 611 bits (316), Expect = e-179
Identities = 348/360 (96%), Gaps = 3/360 (0%)
Strand = Plus / Plus
Query: 1 cagacagagcaaagtatttgagactaggaaataagagaggaggggtggaagggtttcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagacagagcaaagtatttgagactaggaaataagagaggaggggtggaagggtttcctt 260
Query: 61 agctgagcaaccatgataagctt---agtggtatgggtggtgctgagtttgggtaggatg 117
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 261 agctgagcaaccatgataagcttataagtggtatgggcagtgctgagtttgggtaggatg 320
Query: 118 acagacagctcaccggttataagtcgaaggaaagggtgtctttcaggcacagtgctggct 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagacagctcaccggttataagtcgaaggaaagggtgtctttcaggcacagtgctggct 380
Query: 178 actgtgaataattttcctgattgcttccattgtttcttgttatgacatatctgtacagag 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgtgaataattttcctgattgcttccattgtttcttgttatgacatatctgtacagag 440
Query: 238 taatttgatttttttatatgaagctgagtgttgataaaccggtataactaaccctttcca 297
|||||||| | |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 taatttgaaataggtatatgaagctgagtgttgataaaccggtataacaaaccctttcca 500
Query: 298 tgtcttcaaacattattcttacatgttaggagtttggtactttcagtcactttgcaatat 357
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 tgtcttcaaacattattcttacatgttaggagtttggtacttacagtcactttgcaatat 560
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 760
Length adjustment: 9
Effective length of query: 348
Effective length of database: 751
Effective search space: 261348
Effective search space used: 261348
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
