NNTTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGGTTCTCTAATATGGGGAAAATGAATGATGTTGTTTC
TAGACAAATTGGAATTCCTAGTATATTTCCTTTATCTGAAATTCATCCAG
GTAGGCATATCTCTCAGCCTCTTTCTTGTAGACTATCATCTTGTGTTCAC
ATGATGCTTCATAAATCTTATTTTCTGTATGAGGAAATAGGCAAACTGTT
TATAGAGTACACGACTTACTGCTCTGGGTCCCAGGTTCTTCTCTGCTTCC
ATTTAGGTAGTTCAGTCTTATCATCTTGGACTTGCCCTGCCTTCAGATCA
CACTGTGCAGTCATACTTTCTTGTCTACCAGAAATTTCTATAAATGTCTA
AAATATTTTTGGTCAATATGCTCTGCTCTTTTTGAAACTGAACCTACATA
AAGGGGTGTCATTATGGAATTTTCTCCCACGTATGTCATCATACATTGTT
CACGTTGCTTTCCCTATTGCTTTACTTATTCACCCACACATACTGGCCTC
CTTCCTCCACAAATAGTCCTCCTTCTACATTTATGTACGCAAATATAATA
CACTTTTATTCTATACATATACATACATATTTCCTTTTTAAATCTACACT
GCACTTATATAAGATAGTGAAATTTTCCCTTATCAACCTTATTTTATTTA
ATATGATTATCTTTGGCTCTAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAAACAGGGTATGAACTGACACAGGGGCTGGCACAGAGGTCAGC
AAGGGGTGGTGCTTATGCCTTGCTCCTCACAGCTTGCTCAGCCAGCTCAG
GACCACCAACCCATAGACTGCACCACCCACAATGGGCTGGACCCTCCTCC
AAATACTCTACAGGCTTGCCTAAAGCCCCATCTTATGGAGAAATGCTCTC
AATAGAGGTTGCTATCTCTCAAATGACCCTATCTGTGTCAAGGTGGCATA
AAACTAGCCAGCACAGGTTCCTACCACCATCCACAAAGGCTTCATGGGGT
TGGTCATGTTTTGTAATATTGGACTTAAATGCTTCCTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTCCCCGGTTGAACGGGGCCTCTTTTTCCTATTTA
ATTTGAAAGATTTGTTTTTTTATTCGGGATTTTTCTTCCAAGATTCTATG
ACTTAACTTTTAACATTTTTTAATTAGGAATTTTCTTCATTTACATTTCA
AATGCTATTCCCAAAAGTCCCCCATACCCAAACCAACCCCCATTCCCCTA
ACAACCTATTCCCATTTTTTGGGCCCTGGGGGTCCCCTGTAATTGAGGTA
TTAAAAGTTTACAAAATCAAAGGGGCCGGTCTTCCCACTGATAGTCCAAA
ATAAGCCTCCTTTCGATACATATTGTAG

Query= MSMg01no339_b09.b1 MSMg01no339_b09.b1 CHROMAT_FILE:
MSMg01no339_b09.b1 PHD_FILE: MSMg01no339_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:51 2005
         (580 letters)



>mm_chr13_17936927_17937906
          Length = 980

 Score = 1029 bits (532), Expect = 0.0
 Identities = 568/580 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatggggaaaatgaatgatgttgtttctagacaaattggaattcctagtatatttccttt 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 780 tatggggaaaatgaatgatgttgtttctagacaaattgtaattcctagtatatttccttt 721

                                                                       
Query: 61  atctgaaattcatccaggtaggcatatctctcagcctctttcttgtagactatcatcttg 120
           ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 720 atctgaaattcatccaggtaggcatatatctcagcctctttcttatagactatcatcttg 661

                                                                       
Query: 121 tgttcacatgatgcttcataaatcttattttctgtatgaggaaataggcaaactgtttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tgttcacatgatgcttcataaatcttattttctgtatgaggaaataggcaaactgtttat 601

                                                                       
Query: 181 agagtacacgacttactgctctgggtcccaggttcttctctgcttccatttaggtagttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 agagtacacgacttactgctctgggtcccaggttcttctctgcttccatttaggtagttc 541

                                                                       
Query: 241 agtcttatcatcttggacttgccctgccttcagatcacactgtgcagtcatactttcttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 540 agtcttatcatcttggacttgccctgccttcagatcacactgtgcagtcatgctttcttg 481

                                                                       
Query: 301 tctaccagaaatttctataaatgtctaaaatatttttggtcaatatgctctgctcttttt 360
           |||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||
Sbjct: 480 tctaccagaaatttctatgaatgtctaaaatatttttggtcaacatgctctgatcttttt 421

                                                                       
Query: 361 gaaactgaacctacataaaggggtgtcattatggaattttctcccacgtatgtcatcata 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 420 gaaactgaacctacataaaggggtgtcattatggaattttctcccatgtatgtcatcata 361

                                                                       
Query: 421 cattgttcacgttgctttccctattgctttacttattcacccacacatactggcctcctt 480
           ||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 360 cattgttcatgttgctttctctattgctttacttattcacccacacacactggcctcctt 301

                                                                       
Query: 481 cctccacaaatagtcctccttctacatttatgtacgcaaatataatacacttttattcta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cctccacaaatagtcctccttctacatttatgtacgcaaatataatacacttttattcta 241

                                                   
Query: 541 tacatatacatacatatttcctttttaaatctacactgca 580
           |||||||| |||||||||||||||||||||||||||||||
Sbjct: 240 tacatataaatacatatttcctttttaaatctacactgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)