NNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAAGGC
GCGGAATTCATTACTATTACCAATACAGAGAGTTTCCTGTTACAATAGCT
TGCCCATTTAAAAGTGAATACCATTAAGAACACCCTAAGAGAAATCCACC
AGGCTTTGAGGGTCTTGCCTTTCATTTTACATTGTATTTCCTGAATAAAG
GAAAGCAGAAACATGGTAAAAACTGTGCCTGTTCACAGTAAGTTAGAATA
AGTAGTGATATCTATTCTACAGTGCTATACTTTCTGCCTGTATTTCTGTA
AGCAACCATGAAGGATTACAGCAACACTCACCTAAGGTAGCTGTGTGGAT
GATTGATAGGGCATTAATCAAAAGATGCATATCTACCTCAGAATTTGTTC
ACAAGCTTTCTTCTAATAGCTGATTTCATGTTCACTGAGCTCTGTGCCAG
TTTGTCCAATTTATTTTTCAGTGTACAAGCCATTCATCAAAACCCACACT
GATTTAGCACCTCCACCTCCTTTGGGTGAATGTGTATTACCAAGTGTAAG
TACCTTAGTCTACTCATTAAAGAAATAAAACCTGAAGACCCCACTTCAGG
GATAATTAGATCGTCCACAGACCCTGCATTAACCTCTATACAATTTTCAG
TTTCTCACGGGCCTGAACTATTCAGCAGGCTGAAGGAAGGAAACTTAAGA
AGAGGCCACTGATACTTA

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGTGGAATATATACAAAA
AACTCAAGAAGTTAGACTCTAGAGAATCAAATAACCCTATTAAAAATGGG
GTACAGAGTTAAACAGAGAGTTCTCAACTGAGAAATATCGAATGGCCGAG
AAGCAACTAAAGAAATGATCAACATCCTTAGTCATTAGGGAAATGCAAAT
CAAAACAAGCCTGAGATTCTACCTCACACCAGTCAGAATGGCTGAGATAA
AAAATTCAGATGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAAGCTGGTATAACCATTCTGGAAATC
ACTCTGTCAGTTCCTCAGAAAATTGGACCTGAGGACCCAACTATACCACT
CCTGGGCATATACCCAGAAGATGCTCCAACATATAACAAGGACACATGCT
CCATTATGTTCATAGCATCCTTATTTATAATATCCAGAAGCTGGAAAGAA
CCCAGATGTCCTTCAACAGAATATTGGATACAGAAAATGTGGTACATTTA
CACAATGGAGTACTATTCAGTTATTAAAAACAATGACTTCATGAAATTCT
TAAGCAAATGGATGGAACTAGAAAATATCATCCTGAGTGAGGTAAACCAA
TCACAAAAGAACACACATGGTATGTACTN

Query= MSMg01no340_l15.b1 MSMg01no340_l15.b1 CHROMAT_FILE:
MSMg01no340_l15.b1 PHD_FILE: MSMg01no340_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:48 2005
         (616 letters)



>mm_chr13_15749706_15750721
          Length = 1016

 Score = 1191 bits (616), Expect = 0.0
 Identities = 616/616 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtttcctgttacaatagcttgcccatttaaaagtgaataccattaagaacaccctaagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 gtttcctgttacaatagcttgcccatttaaaagtgaataccattaagaacaccctaagag 757

                                                                       
Query: 61  aaatccaccaggctttgagggtcttgcctttcattttacattgtatttcctgaataaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 aaatccaccaggctttgagggtcttgcctttcattttacattgtatttcctgaataaagg 697

                                                                       
Query: 121 aaagcagaaacatggtaaaaactgtgcctgttcacagtaagttagaataagtagtgatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 aaagcagaaacatggtaaaaactgtgcctgttcacagtaagttagaataagtagtgatat 637

                                                                       
Query: 181 ctattctacagtgctatactttctgcctgtatttctgtaagcaaccatgaaggattacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ctattctacagtgctatactttctgcctgtatttctgtaagcaaccatgaaggattacag 577

                                                                       
Query: 241 caacactcacctaaggtagctgtgtggatgattgatagggcattaatcaaaagatgcata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 caacactcacctaaggtagctgtgtggatgattgatagggcattaatcaaaagatgcata 517

                                                                       
Query: 301 tctacctcagaatttgttcacaagctttcttctaatagctgatttcatgttcactgagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tctacctcagaatttgttcacaagctttcttctaatagctgatttcatgttcactgagct 457

                                                                       
Query: 361 ctgtgccagtttgtccaatttatttttcagtgtacaagccattcatcaaaacccacactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ctgtgccagtttgtccaatttatttttcagtgtacaagccattcatcaaaacccacactg 397

                                                                       
Query: 421 atttagcacctccacctcctttgggtgaatgtgtattaccaagtgtaagtaccttagtct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 atttagcacctccacctcctttgggtgaatgtgtattaccaagtgtaagtaccttagtct 337

                                                                       
Query: 481 actcattaaagaaataaaacctgaagaccccacttcagggataattagatcgtccacaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 actcattaaagaaataaaacctgaagaccccacttcagggataattagatcgtccacaga 277

                                                                       
Query: 541 ccctgcattaacctctatacaattttcagtttctcacgggcctgaactattcagcaggct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ccctgcattaacctctatacaattttcagtttctcacgggcctgaactattcagcaggct 217

                           
Query: 601 gaaggaaggaaactta 616
           ||||||||||||||||
Sbjct: 216 gaaggaaggaaactta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)