Query= MSMg01no341_m18.b1 MSMg01no341_m18.b1 CHROMAT_FILE:
MSMg01no341_m18.b1 PHD_FILE: MSMg01no341_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:08 2005
(482 letters)
>mm_chr13_98350098_98350979
Length = 882
Score = 901 bits (466), Expect = 0.0
Identities = 475/478 (99%)
Strand = Plus / Minus
Query: 5 gaattctctgtatctctggatcttgacccctgacacagttaagcctagcaaacaatggtc 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gaattctctgtagctctggatcttgacccctgacacagttaagcctagcaaacaatggtc 623
Query: 65 gaatcatccgtcattactctctagttgaagagaggtcattcgacacaataagctgaaagc 124
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 caatcatccatcattactctctagttgaagagaggtcattcgacacaataagctgaaagc 563
Query: 125 caagggaaggactgagggctgtcatgtgtcctcttcacaagtgggtgaacttgagtcttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 caagggaaggactgagggctgtcatgtgtcctcttcacaagtgggtgaacttgagtcttg 503
Query: 185 ccagttgggatgtgaggaatctggggctgcttcaggaatgtcagtcatttcatcctaagg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ccagttgggatgtgaggaatctggggctgcttcaggaatgtcagtcatttcatcctaagg 443
Query: 245 caacgctggtattcttgctcctccccatgtttggtcattaactagacacacagagaccag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 caacgctggtattcttgctcctccccatgtttggtcattaactagacacacagagaccag 383
Query: 305 ctctgaggtgcactcttatcacaagtcctgcttgctgctaaaataaagtcttcccattgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctctgaggtgcactcttatcacaagtcctgcttgctgctaaaataaagtcttcccattgt 323
Query: 365 tcccacttcctagaaggaaaaccctggaccttccaagtgctccagagaggggtgagactc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcccacttcctagaaggaaaaccctggaccttccaagtgctccagagaggggtgagactc 263
Query: 425 ttcagattcaaagctgtttacaccaaccaatgccctttcccaaggaatgcctttgaaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttcagattcaaagctgtttacaccaaccaatgccctttcccaaggaatgcctttgaaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no341_m18.g1 MSMg01no341_m18.g1 CHROMAT_FILE:
MSMg01no341_m18.g1 PHD_FILE: MSMg01no341_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:08 2005
(396 letters)
>mm_chr13_98201942_98202737
Length = 796
Score = 700 bits (362), Expect = 0.0
Identities = 392/412 (95%), Gaps = 16/412 (3%)
Strand = Plus / Plus
Query: 1 ctcatgtgacagggcaaggcactgcagaggatcctgcatcttgtattcttgcagaattta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcatgtgacagggcaaggcactgcagaggatcctgcatcttgtattcttgcagaattta 260
Query: 61 atctctttgatggagactcccatgggaaattgacagaactctattctaggaacctgaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctctttgatggagactcccatgggaaattgacagaactctattctaggaacctgaggt 320
Query: 121 caagatgccctggctaacttagtttctgttaaactgcttccttctgcagaatcccctcca 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 caagatgccctggctaacttagtttctgttaaactgcttccttcagcagaatcccctcca 380
Query: 181 ggtatctaagcttgggataaactgcttgcttttgtggaacacccctgtagctgcccagcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtatctaagcttgggataaactgcttgcttttgtggaacacccctgtagctgcccagcc 440
Query: 241 agaagccaggatgcagttttttgcttttaaaagccccttggtctaagtgctcagggctac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaagccaggatgcagttttttgcttttaaaagccccttggtctaagtgctcagggctac 500
Query: 301 acttagttccggagtactggaatatagtactag----------------agtagtggagt 344
||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 501 acttagttccggagtactggaatatagtactagttggctggaattctggagtactggagt 560
Query: 345 atagtaccggagtagtggagtatattaccggccgggtggaacagactttccg 396
||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 561 atagtaccggagttgtggagtatagtaccggccgggtggaacagactttccg 612
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space: 304569
Effective search space used: 304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
