Query= MSMg01no342_h24.b1 MSMg01no342_h24.b1 CHROMAT_FILE:
MSMg01no342_h24.b1 PHD_FILE: MSMg01no342_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:02 2005
(406 letters)
>mm_chr13_88816228_88817032
Length = 805
Score = 439 bits (227), Expect = e-127
Identities = 289/319 (90%), Gaps = 16/319 (5%)
Strand = Plus / Minus
Query: 97 tagcatccaaagtctctcatttttctcttgaaaaatcaacttactttgattccatctttc 156
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 430 tagcatccaaagtctctcatttttctcttgaaaaatcaacttactttggttccatctttc 371
Query: 157 tctgtcctcttccctcacaaaaataatcttccagaattgctcatcctaagtgcatcattt 216
|||||||||||| ||||||| || ||||||||||||||| ||||||||||||| | |||
Sbjct: 370 tctgtcctcttctctcacaataa-aatcttccagaattgttcatcctaagtgctttgttt 312
Query: 217 agagttttttttt---------------taattcttctttgcatttgtaaaattaaggat 261
||||||||||||| ||||||||| |||||||||||| ||||||||
Sbjct: 311 agagtttttttttttttttttttttttgtaattcttcggtgcatttgtaaacttaaggat 252
Query: 262 gaaattgttgccaaggtgagcattatgccgtgcaagctgaagccaaatttgtattttcac 321
||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||
Sbjct: 251 gaaattgttgccaaggtgagcattatgccgttcaagctaaagccaaattggtattttcac 192
Query: 322 ttcttaacttacataacctatgctatggtttgaatgtgttctgtccaaattttatgttac 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ttcttaacttacataacctatgctatggtttgaatgtgttctgtccaaattttatgttac 132
Query: 382 catattatgcctttcatga 400
||||||||||||||||||
Sbjct: 131 aatattatgcctttcatga 113
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 805
Length adjustment: 9
Effective length of query: 397
Effective length of database: 796
Effective search space: 316012
Effective search space used: 316012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_h24.g1 MSMg01no342_h24.g1 CHROMAT_FILE:
MSMg01no342_h24.g1 PHD_FILE: MSMg01no342_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:02 2005
(413 letters)
>mm_chr13_88685022_88685834
Length = 813
Score = 717 bits (371), Expect = 0.0
Identities = 401/411 (97%), Gaps = 2/411 (0%)
Strand = Plus / Plus
Query: 1 tttgactattgtaccaatgtgttcataattcatggtttttgagacacaaaaacaaacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgactattgtaccaatgtgttcataattcatggtttttgagacacaaaaacaaacaaa 260
Query: 61 caaaaaaacttcccccctctgttattttccacattattaaaactattctatataattctt 120
||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 caaaaaaacttgtcccctctattatttttcacattattaaaactattctatataattctt 320
Query: 121 taaaataataaaatcaatatataagctagatattaaaattttagtgtatggacagtgaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaataataaaatcaatatataagctagatattaaaattttagtgtatggacagtgaac 380
Query: 181 ccttaaactctacctaacatttgcatagtatatatttttagatgtgtgcatgaggttgtt 240
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 ccttaaactctacctaacgtttgcatagtatatatttttagatgtgtggatgaggttgtt 440
Query: 241 ggaaaacactgataaaacatgagatttcaagtttttatttgagaaataaatcagtatttt 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaaacactgattaaacatgagatttcaagtttttatttgagaaataaatcagtatttt 500
Query: 301 tcaaacattgttttgtaagtagtatttttaatacagccacttatcatgaacagcttttta 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 tcaaacattgttttgtaagtagtatttttaatacagccacttatcatgaacagcctttta 560
Query: 361 aaaaa-tgattattttatgagtgaacaagttttattataaaaaaactatgc 410
||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 aaaaaatgattattttatgagtgaacaagttttattataaaaaa-ctatgc 610
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space: 324816
Effective search space used: 324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
