BAC Information

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BAC

Clone NameMSMg01-342M08
Chromosome13 (Build37)
Map Location 56,732,046 - 56,922,650
singlet/doubletdoublet
Overlap geneTgfbi, Smad5, EG627415, Trpc7
Upstream geneCaml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21, Lect2
Downstream geneLOC100040995, Spock1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342M08.T7 (MSMg01no342_m08.b1)MSMg01-342M08.TJ (MSMg01no342_m08.g1)
ACCAG456242AG456243
length732746
length of high quality
(start - end)		244 (56 - 299)457 (67 - 523)
definitionCHROMAT_FILE: MSMg01no342_m08.b1 PHD_FILE: MSMg01no342_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:23 2005CHROMAT_FILE: MSMg01no342_m08.g1 PHD_FILE: MSMg01no342_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,732,046 - 56,732,289)(56,922,194 - 56,922,650)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTGTTTC
CCGGAATGTGGGGAAAAGCACCCTGCTGTTCTGTTGTCTCTGGGACAGCT
GCCCCAACCCTACAGCCCTGCCCTGATTTACAACAGCCTTGGAACCTTCC
GCCTACCGTAGTCCAAAGCAGATGTGATTCTATCAGGAACTTTGGACTAC
CCGTTGTTTATCTGAACCAGCCAAGAATGTATTGGAGCAGGGGATCTTTT
CCTCAGAGCTCAATACTTTGCCTCTGCCAGGAGAGTGGAGCAGCCCTCGT
TTTTTGGTTTGCAGGGTCAACACTGATGTATATGGGCTGGGGTCAGCTGA
GGTGCTGTTATGGGGACATGGAGAAAGTCTCCTCCTTCTGAGAGCAAAAT
GACAAGCATGCTCAGTAGCTGCACCTATTCTTTTCTCTAATAGTTGCTGA
ATGTTAATGGGTTTTGACAGTCACCCTTACTTTCTGTCTCCATTTCCAAA
CCACGGAGAGATGGGCAGGCTCTCCTGCACGTGTGTCTCTCATCACACAC
CTTATCTCCGGAAACTGTCTCCCTGGATCTGGCCATTCCCTTCTCTTGCA
AATGGTGCCCCTCGCTTTCATCTTTCACAGGAATAATTTTGTTTCTCGAA
CCCCTGGTGTTCAAAATCTTCTTGTCCTCTCACGTCTTCTTGTAACTTTG
GTAACTGACTATTTGTACCTCCCTCGTTTAGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATTCTCTTCCCGATGTCCCACCTGTATTTCCTGC
CTAAGCCACAGGCCAGAGACCTTTTAATAGACAGGTGAGGCATCCACACA
ATACACAAGATGCTCTCTACAGTAATGTGTTATTTGTTTAAATTAGTATG
CTAAATGGTTGTGGATTACTATCTGTGCTGATGTTTTGTGCTTCCAAGGT
TTCCCACAATTGCCTAGGAAATGGTTCCCCATGCCTTCCGTTTATTACTG
GAAGTGGCTAAAATAGTGGGAAAATGCTACTCATTTCTTTTTTCTAACAC
TGAAAACTGCAAATCAGTTGACAGGAGAAAAATTGAAAACTTGCCAAAGC
TATCATCAGGGATATAATAAATAAACAAAACACTAATAAGCTGTAAACTT
TATACTGCAAAGATCTGGATGTAATGGGGGATATTTCTAGTGAAATAAAA
GTTTTAAAAGAACTGAATTACTGTGCAGTAATGACAGTTGGTCAATTAAT
TAAATTTACTTAACAGTATTCCCCCAGATTATGCTTTTCCTGGCAAATAT
TTAAAAATTTGTATAATTTAATATATTCACCCATTATTATTTTCTAAACA
AGTATTCTTGGATCAAAGGGGGTTTTTGCCCTTCCTTTTTTTCTCAATTC
TTTAACACTTTATTGTCACTAAGGTCTTTTTTTATATCCTTGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_m08.b1 MSMg01no342_m08.b1 CHROMAT_FILE:
MSMg01no342_m08.b1 PHD_FILE: MSMg01no342_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:23 2005
         (244 letters)



>mm_chr13_56731846_56732489
          Length = 644

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtggggaaaagcaccctgctgttctgttgtctctgggacagctgccccaaccctacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtggggaaaagcaccctgctgttctgttgtctctgggacagctgccccaaccctacag 260

                                                                       
Query: 61  ccctgccctgatttacaacagccttggaaccttccgcctaccgtagtccaaagcagatgt 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 ccctgccctgatttacaacagccttggaaccttccgcctaccatagtccaaagcagatgt 320

                                                                       
Query: 121 gattctatcaggaactttggactacccgttgtttatctgaaccagccaagaatgtattgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattctatcaggaactttggactacccgttgtttatctgaaccagccaagaatgtattgg 380

                                                                       
Query: 181 agcaggggatcttttcctcagagctcaatactttgcctctgccaggagagtggagcagcc 240
            || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcgggggatcttttcctcagagctcaatactttgcctctgccaggagagtggagcagcc 440

               
Query: 241 ctcg 244
           ||||
Sbjct: 441 ctcg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no342_m08.g1 MSMg01no342_m08.g1 CHROMAT_FILE:
MSMg01no342_m08.g1 PHD_FILE: MSMg01no342_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:23 2005
         (457 letters)



>mm_chr13_56921889_56922745
          Length = 857

 Score =  853 bits (441), Expect = 0.0
 Identities = 453/457 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctcttcccgatgtcccacctgtatttcctgcctaagccacaggccagagacctttta 60
           ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 762 attctcttcccgatgtcccacctctatttcctgcctaagccacaggccagaggcctttta 703

                                                                       
Query: 61  atagacaggtgaggcatccacacaatacacaagatgctctctacagtaatgtgttatttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 atagacaggtgaggcatccacacaatacacaagatgctctctacagtaatgtgttatttg 643

                                                                       
Query: 121 tttaaattagtatgctaaatggttgtggattactatctgtgctgatgttttgtgcttcca 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 642 tttaaattagtatgctaaatggttgtggattcctatctgtgctgatgttttgtgcttcca 583

                                                                       
Query: 181 aggtttcccacaattgcctaggaaatggttccccatgccttccgtttattactggaagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aggtttcccacaattgcctaggaaatggttccccatgccttccgtttattactggaagtg 523

                                                                       
Query: 241 gctaaaatagtgggaaaatgctactcatttcttttttctaacactgaaaactgcaaatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gctaaaatagtgggaaaatgctactcatttcttttttctaacactgaaaactgcaaatca 463

                                                                       
Query: 301 gttgacaggagaaaaattgaaaacttgccaaagctatcatcagggatataataaataaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gttgacaggagaaaaattgaaaacttgccaaagctatcatcagggatataataaataaac 403

                                                                       
Query: 361 aaaacactaataagctgtaaactttatactgcaaagatctggatgtaatgggggatattt 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aaaacgctaataagctgtaaactttatactgcaaagatctggatgtaatgggggatattt 343

                                                
Query: 421 ctagtgaaataaaagttttaaaagaactgaattactg 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 342 ctagtgaaataaaagttttaaaagaactgaattactg 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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