BAC Information

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BAC

Clone NameMSMg01-343F01
Chromosome13 (Build37)
Map Location 69,285,975 - 69,418,799
singlet/doubletdoublet
Overlap genenone
Upstream geneAA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik, Adcy2, LOC666205
Downstream geneLOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291, 4930520P13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343F01.T7 (MSMg01no343_f01.b1)MSMg01-343F01.TJ (MSMg01no343_f01.g1)
ACCAG456655AG456656
length731744
length of high quality
(start - end)		399 (67 - 465)370 (72 - 441)
definitionCHROMAT_FILE: MSMg01no343_f01.b1 PHD_FILE: MSMg01no343_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:06 2005CHROMAT_FILE: MSMg01no343_f01.g1 PHD_FILE: MSMg01no343_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,285,975 - 69,286,373)(69,418,430 - 69,418,799)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAA
TTCAAGGCAATTTCTTAGTAAAGCCCAATACTCATACCTTTTGTGAATGT
TTTTCAGGTTCAAAGCCTCTAATTATTCTTAAACCTCTGTTTGCCAGCTT
TTTGCTTCAATGACAGGAGCCCTCTGCTTCCATTACACTAACCCCTGCCT
ACTGTATATAGTTTCTTTCCAATTGATTAATATGTACAGAAGCCAATATG
CCTTAAAGTTTCCTTCAGGGATTTTCAGAGTGATGTTGGTAAGTACTACC
ATGTCCACCATCAAGTCAAGCATGCATGTGTATTTTATGCATTCTCTTTA
GCTGTCCTTGGATCATAATGTGATATTCCCAAGTGAGCTACAGTAACACC
ATTGATGTGTTTCCTGCTTCTGCAATAGTTTATCTTCTACAACAAAGCAA
TTGTTTTTATCCCTTAGTGTTTTCTGTATATGGTCTCTCAGCCCATTACA
TGGAATTATTAATGATTTAAGGATGCAACTTGATAATCTTCATCTTCGTC
TCTCTTACTCCACCATATTATTTCCTCCCTTTTTACTATCCTTCTCCCAG
CAACACTTACTTCTACTCCTTCCTATATTCCCTTACTTTCCCTCATCTCA
AATTTTATTACCCTTTATTGTTCATAATAACACATCTATACTTCTTTTTT
TTATTAACTTCTCCACCTCTTTCCCCTTTTT

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATAGAGCAAATGGCAGTGATGTTGCGCGG
GGAATACTTGCCTGCTTGCTCCTCTCTCAGCTGGAACAAAGCACTCCAGG
ATGCACACTGTCAGACCCGTGACACAACCCAGGCAAGCCTGGGGATTTTC
CACTCTCAGTGATGTTGGGCAAACGAAAGGAAGCATGCAAGGCTCTCGGT
AAGGTGGTTGCTGCTTCATACTGTAGTAGTTAGAGATTCATTTGCCCCTC
TTCATGGAGCACCTTTATTCCCTTAGTCTCTCTGGGAATAAAACCAACTG
CAAGGATATAAAGCTGAAGTACTCATGCCCAAGCAATGGTTTGTCATAGC
ACACTCTTTTCAGATCATGCTCATTGGTGTGCACCCAGCATACATCCTTA
GGGTGCACACAACATGCATCCTTGTGTGCATACAGTAGGCACCCTTGGTG
TTGTCTAATTTTGTTTCCTTGCGCGCTACCACCATTTATTCTTAGGTGCT
TATCCTGCAAGCTATCCTTGTTCGCTTTTATTTTTATGTTAACTTTGTTT
TCTCTCCCAATTTTCTACCTACTTCTAAGTTATCTTTTATATTTCCTATT
ACCGCTCTGGCTCATATTATATTAAAGAACGTAGCGTCACTTTTATTCTG
CTTTTTTTCCCCATCTCCCTTTCTTTCTCTTTTTATTCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_f01.b1 MSMg01no343_f01.b1 CHROMAT_FILE:
MSMg01no343_f01.b1 PHD_FILE: MSMg01no343_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:06 2005
         (399 letters)



>mm_chr13_69285775_69286573
          Length = 799

 Score =  772 bits (399), Expect = 0.0
 Identities = 399/399 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaaagcccaatactcataccttttgtgaatgtttttcaggttcaaagcctctaattat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaaagcccaatactcataccttttgtgaatgtttttcaggttcaaagcctctaattat 260

                                                                       
Query: 61  tcttaaacctctgtttgccagctttttgcttcaatgacaggagccctctgcttccattac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttaaacctctgtttgccagctttttgcttcaatgacaggagccctctgcttccattac 320

                                                                       
Query: 121 actaacccctgcctactgtatatagtttctttccaattgattaatatgtacagaagccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actaacccctgcctactgtatatagtttctttccaattgattaatatgtacagaagccaa 380

                                                                       
Query: 181 tatgccttaaagtttccttcagggattttcagagtgatgttggtaagtactaccatgtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgccttaaagtttccttcagggattttcagagtgatgttggtaagtactaccatgtcc 440

                                                                       
Query: 241 accatcaagtcaagcatgcatgtgtattttatgcattctctttagctgtccttggatcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accatcaagtcaagcatgcatgtgtattttatgcattctctttagctgtccttggatcat 500

                                                                       
Query: 301 aatgtgatattcccaagtgagctacagtaacaccattgatgtgtttcctgcttctgcaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatgtgatattcccaagtgagctacagtaacaccattgatgtgtttcctgcttctgcaat 560

                                                  
Query: 361 agtttatcttctacaacaaagcaattgtttttatccctt 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtttatcttctacaacaaagcaattgtttttatccctt 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no343_f01.g1 MSMg01no343_f01.g1 CHROMAT_FILE:
MSMg01no343_f01.g1 PHD_FILE: MSMg01no343_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:06 2005
         (370 letters)



>mm_chr13_69418230_69418999
          Length = 770

 Score =  716 bits (370), Expect = 0.0
 Identities = 370/370 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagagcaaatggcagtgatgttgcgcggggaatacttgcctgcttgctcctctctcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 atagagcaaatggcagtgatgttgcgcggggaatacttgcctgcttgctcctctctcagc 511

                                                                       
Query: 61  tggaacaaagcactccaggatgcacactgtcagacccgtgacacaacccaggcaagcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tggaacaaagcactccaggatgcacactgtcagacccgtgacacaacccaggcaagcctg 451

                                                                       
Query: 121 gggattttccactctcagtgatgttgggcaaacgaaaggaagcatgcaaggctctcggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gggattttccactctcagtgatgttgggcaaacgaaaggaagcatgcaaggctctcggta 391

                                                                       
Query: 181 aggtggttgctgcttcatactgtagtagttagagattcatttgcccctcttcatggagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aggtggttgctgcttcatactgtagtagttagagattcatttgcccctcttcatggagca 331

                                                                       
Query: 241 cctttattcccttagtctctctgggaataaaaccaactgcaaggatataaagctgaagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 cctttattcccttagtctctctgggaataaaaccaactgcaaggatataaagctgaagta 271

                                                                       
Query: 301 ctcatgcccaagcaatggtttgtcatagcacactcttttcagatcatgctcattggtgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ctcatgcccaagcaatggtttgtcatagcacactcttttcagatcatgctcattggtgtg 211

                     
Query: 361 cacccagcat 370
           ||||||||||
Sbjct: 210 cacccagcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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