BAC Information

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BAC

Clone NameMSMg01-343K19
Chromosome13 (Build37)
Map Location 33,986,404 - 34,157,996
singlet/doubletdoublet
Overlap geneSerpinb6c, Serpinb6a, Nqo2, 4930482L21Rik, Ripk1, Bphl
Upstream geneSerpinb1c, Serpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720
Downstream geneTubb2a, LOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik, LOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343K19.T7 (MSMg01no343_k19.b1)MSMg01-343K19.TJ (MSMg01no343_k19.g1)
ACCAG456926AG456927
length764773
length of high quality
(start - end)		540 (21 - 560)414 (63 - 476)
definitionCHROMAT_FILE: MSMg01no343_k19.b1 PHD_FILE: MSMg01no343_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:36 2005CHROMAT_FILE: MSMg01no343_k19.g1 PHD_FILE: MSMg01no343_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,986,404 - 33,986,933)(34,157,583 - 34,157,996)
sequence
ATACGACTCACTATATTCAGAGGATCCGCGGAATTCCAGAACATCCCACC
ACTACACAGAGAAACCCTGTCTCAAAATTTTTTTCAAAAGCTTTCTGATT
CCTGATTTAGAGCTAGCAATGCAGACCAACTTTAGAATACTTTGCTTTGC
CTAGCATATTCAAGTCCTTAGGTTCAACACCAGGCATGTCAAAAGAACTC
CTGATTTAATGAAGAAAAGTCATTATTGTTTGAAGCTCTTGCAAAGGTAC
TAATAATATGATTATTAGCAATAGACTACAAAGCCAGGAATGATGGCACA
TATCTTTAATCCTAGCACTTGAATGGCAGGGGAAGGTGGATCTCTGATTT
CTAGTCCACCTTGGTCTAAATAGTGAGTTATAACACAGTAAGAGCTATAG
AGTGAGGACCTGTCTCCAAAAACAAAAATAAAAATATTAGAAACAGACAG
ATAACCTGGCAGGTGAAGGTGCTTGCTACCAAACCTAAAGAACTGAGTAG
AATCCCAGGACAACACTGGCAGAAAGAAAAAACCAAATCTGTGAGTGATT
TTAACTGCAGGTGTGCCCAGACCAACATATACCCTCCACCAACCAATTTA
CAAACAAGCCCCCCTAAATGTACCCACTTTTTCAATATAAACCCACTGTA
TGACTTGGATGGGGGTAAATAACAGCTCCATTGGCATAAGAAATCCTGCT
CCAGAATTCCCAGGGTCAGGGTGTGCATCCCTATTCCTGTGTACCGAATC
CCTCTAGAAAAATN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCTAGGCCAAACCATTTTAGAGACAGATGTTTAATGAGC
TTAGCTTTTTAAGGGAAGTCTCTGCATTTATAAAGAGGGTCAGAGTAGGA
AAACCCATCATTTCTGAAGCAGAAAACAATTAACTAGGCCACCTAGCATC
TCTCTAATGGTATGTTCATAAGAGGCAGTTGTGCTATGGTGAAAAAAATA
TGTTTTAGGAAAATCCAGGACTTGTCGTTTACCAACTAAATGGCTTGAAA
TACTGTTTAACATCTGTTCTCATCTACAAAATGGAACAATTTTCCCTAAG
TTTGTAGTGAAGTGTAATAAGTAAAATATTTTTAAAATAGAAAACGTTAC
ATGGAAACATCACATTGCTCCCTCTAAATATATAAAATTAAAAACATAGA
AACTGAGGTGTATCATTGAAGTTATGGCTATTTGTGGGTTCTTTTTTTTC
TANCTTTTCCACCCCTCTTCTTCTCCCTTTCAGGCCCTAAACTTGATAGG
AGAGAAAAAAGAATAAGGGGAAAAGGGGAAAAAAAAACCCTTTACTACTT
CCTGGTGGATAGGGGGACCAGGTCCTTTAGGGAGGTTTGATTTTGCCACA
AAAAAAAAAAATTTCCCTTTTCCTTTTTGGAAGGGCAACTGGGAAACAAA
TCCAACTAACAGGGGGCAGTTGCCCCCCCCTCCGGCCCCCGGTTTTAAAA
CCCTTGAAGGGGCCGAAATTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_k19.b1 MSMg01no343_k19.b1 CHROMAT_FILE:
MSMg01no343_k19.b1 PHD_FILE: MSMg01no343_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:36 2005
         (540 letters)



>mm_chr13_33986194_33987133
          Length = 940

 Score = 1009 bits (522), Expect = 0.0
 Identities = 528/530 (99%)
 Strand = Plus / Plus

                                                                       
Query: 11  gaattccagaacatcccaccactacacagagaaaccctgtctcaaaatttttttcaaaag 70
           |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 211 gaattccagaacatcccagcactacacagagaaaccctgtctcaaaaattttttcaaaag 270

                                                                       
Query: 71  ctttctgattcctgatttagagctagcaatgcagaccaactttagaatactttgctttgc 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ctttctgattcctgatttagagctagcaatgcagaccaactttagaatactttgctttgc 330

                                                                       
Query: 131 ctagcatattcaagtccttaggttcaacaccaggcatgtcaaaagaactcctgatttaat 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctagcatattcaagtccttaggttcaacaccaggcatgtcaaaagaactcctgatttaat 390

                                                                       
Query: 191 gaagaaaagtcattattgtttgaagctcttgcaaaggtactaataatatgattattagca 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gaagaaaagtcattattgtttgaagctcttgcaaaggtactaataatatgattattagca 450

                                                                       
Query: 251 atagactacaaagccaggaatgatggcacatatctttaatcctagcacttgaatggcagg 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 atagactacaaagccaggaatgatggcacatatctttaatcctagcacttgaatggcagg 510

                                                                       
Query: 311 ggaaggtggatctctgatttctagtccaccttggtctaaatagtgagttataacacagta 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ggaaggtggatctctgatttctagtccaccttggtctaaatagtgagttataacacagta 570

                                                                       
Query: 371 agagctatagagtgaggacctgtctccaaaaacaaaaataaaaatattagaaacagacag 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 agagctatagagtgaggacctgtctccaaaaacaaaaataaaaatattagaaacagacag 630

                                                                       
Query: 431 ataacctggcaggtgaaggtgcttgctaccaaacctaaagaactgagtagaatcccagga 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ataacctggcaggtgaaggtgcttgctaccaaacctaaagaactgagtagaatcccagga 690

                                                             
Query: 491 caacactggcagaaagaaaaaaccaaatctgtgagtgattttaactgcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 caacactggcagaaagaaaaaaccaaatctgtgagtgattttaactgcag 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no343_k19.g1 MSMg01no343_k19.g1 CHROMAT_FILE:
MSMg01no343_k19.g1 PHD_FILE: MSMg01no343_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:36 2005
         (414 letters)



>mm_chr13_34157383_34158196
          Length = 814

 Score =  801 bits (414), Expect = 0.0
 Identities = 414/414 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaggccaaaccattttagagacagatgtttaatgagcttagctttttaagggaagtctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ctaggccaaaccattttagagacagatgtttaatgagcttagctttttaagggaagtctc 555

                                                                       
Query: 61  tgcatttataaagagggtcagagtaggaaaacccatcatttctgaagcagaaaacaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tgcatttataaagagggtcagagtaggaaaacccatcatttctgaagcagaaaacaatta 495

                                                                       
Query: 121 actaggccacctagcatctctctaatggtatgttcataagaggcagttgtgctatggtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 actaggccacctagcatctctctaatggtatgttcataagaggcagttgtgctatggtga 435

                                                                       
Query: 181 aaaaaatatgttttaggaaaatccaggacttgtcgtttaccaactaaatggcttgaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aaaaaatatgttttaggaaaatccaggacttgtcgtttaccaactaaatggcttgaaata 375

                                                                       
Query: 241 ctgtttaacatctgttctcatctacaaaatggaacaattttccctaagtttgtagtgaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctgtttaacatctgttctcatctacaaaatggaacaattttccctaagtttgtagtgaag 315

                                                                       
Query: 301 tgtaataagtaaaatatttttaaaatagaaaacgttacatggaaacatcacattgctccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tgtaataagtaaaatatttttaaaatagaaaacgttacatggaaacatcacattgctccc 255

                                                                 
Query: 361 tctaaatatataaaattaaaaacatagaaactgaggtgtatcattgaagttatg 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tctaaatatataaaattaaaaacatagaaactgaggtgtatcattgaagttatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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